Gene annotation
Transcriptome id Sobic.002G398000.1
Synonym Sb02g041270
Functional annotation SFT2, putative, expressed
UniProt C5X420
Pfam PF04178
Panther DB PTHR23137 PTHR23137:SF10
NCBI CDD KOG2887; Membrane protein involved in ER to Golgi transport
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT4G26550 : Got1/Sft2-like vescicle transport protein family
RAP-DB (Rice) LOC_Os06g19620.1 : SFT2, putative, expressed
MaizeGDB (Corn) Zm00025a015322
Brachypodium KQK18535
Barley -
Wheat TraesCS7B02G126600 , TraesCS7A02G220800 , TraesCS7D02G221300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G203100 expressed protein -
2 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
3 Sobic.006G278700 expressed protein -
4 Sobic.003G273400 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed K00671: glycylpeptide N-tetradecanoyltransferase
5 Sobic.001G085100 expressed protein -
6 Sobic.006G183000 RING zinc finger protein, putative, expressed -
7 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
8 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
9 Sobic.004G057800 URED, putative, expressed K03190: ureD, urease accessory protein
10 Sobic.002G129000 RING zinc finger protein, putative, expressed -
11 Sobic.009G004400 tRNA methyltransferase complex GCD14 subunit, putative, expressed K07442: TRM61, tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit
12 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
13 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
14 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
15 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
16 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
17 Sobic.007G205000 zinc finger family protein, putative, expressed -
18 Sobic.001G430800 GA17271-PA, putative, expressed -
19 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
20 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4


Gene co-expression network
sample Sobic002G398000 Sobic002G398000 Sobic006G203100 Sobic006G203100 Sobic002G398000--Sobic006G203100 Sobic002G077900 Sobic002G077900 Sobic002G398000--Sobic002G077900 Sobic006G278700 Sobic006G278700 Sobic002G398000--Sobic006G278700 Sobic003G273400 Sobic003G273400 Sobic002G398000--Sobic003G273400 Sobic001G085100 Sobic001G085100 Sobic002G398000--Sobic001G085100 Sobic006G183000 Sobic006G183000 Sobic002G398000--Sobic006G183000 Sobic001G249700 Sobic001G249700 Sobic002G398000--Sobic001G249700 Sobic009G033900 Sobic009G033900 Sobic002G398000--Sobic009G033900 Sobic004G057800 Sobic004G057800 Sobic002G398000--Sobic004G057800 Sobic002G256200 Sobic002G256200 Sobic006G203100--Sobic002G256200 Sobic010G073100 Sobic010G073100 Sobic006G203100--Sobic010G073100 Sobic002G341800 Sobic002G341800 Sobic006G203100--Sobic002G341800 Sobic008G145100 Sobic008G145100 Sobic006G203100--Sobic008G145100 Sobic001G338400 Sobic001G338400 Sobic006G203100--Sobic001G338400 Sobic001G145500 Sobic001G145500 Sobic006G203100--Sobic001G145500 Sobic002G029300 Sobic002G029300 Sobic006G203100--Sobic002G029300 Sobic006G203100--Sobic001G249700 Sobic006G203100--Sobic006G183000 Sobic001G168900 Sobic001G168900 Sobic002G077900--Sobic001G168900 Sobic001G226000 Sobic001G226000 Sobic002G077900--Sobic001G226000 Sobic001G370300 Sobic001G370300 Sobic002G077900--Sobic001G370300 Sobic003G420700 Sobic003G420700 Sobic002G077900--Sobic003G420700 Sobic004G307500 Sobic004G307500 Sobic002G077900--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic002G077900--Sobic009G058500 Sobic009G258400 Sobic009G258400 Sobic002G077900--Sobic009G258400 Sobic006G044600 Sobic006G044600 Sobic002G077900--Sobic006G044600 Sobic010G193800 Sobic010G193800 Sobic002G077900--Sobic010G193800 Sobic002G378200 Sobic002G378200 Sobic006G278700--Sobic002G378200 Sobic006G252700 Sobic006G252700 Sobic006G278700--Sobic006G252700 Sobic007G205000 Sobic007G205000 Sobic006G278700--Sobic007G205000 Sobic001G360200 Sobic001G360200 Sobic006G278700--Sobic001G360200 Sobic003G401100 Sobic003G401100 Sobic006G278700--Sobic003G401100 Sobic001G143500 Sobic001G143500 Sobic006G278700--Sobic001G143500 Sobic006G278700--Sobic001G226000 Sobic007G118200 Sobic007G118200 Sobic006G278700--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic006G278700--Sobic008G004400 Sobic008G137600 Sobic008G137600 Sobic003G273400--Sobic008G137600 Sobic001G532100 Sobic001G532100 Sobic003G273400--Sobic001G532100 Sobic001G207500 Sobic001G207500 Sobic003G273400--Sobic001G207500 Sobic002G306400 Sobic002G306400 Sobic003G273400--Sobic002G306400 Sobic001G294900 Sobic001G294900 Sobic003G273400--Sobic001G294900 Sobic003G273400--Sobic002G341800 Sobic006G109700 Sobic006G109700 Sobic003G273400--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic003G273400--Sobic002G268400 Sobic002G280600 Sobic002G280600 Sobic003G273400--Sobic002G280600 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G091300 Sobic001G091300 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic002G129000 Sobic002G129000 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic006G183000--Sobic009G033900 Sobic006G183000--Sobic006G109700 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic001G249700--Sobic009G033900 Sobic010G247400 Sobic010G247400 Sobic001G249700--Sobic010G247400 Sobic009G164000 Sobic009G164000 Sobic001G249700--Sobic009G164000 Sobic004G156800 Sobic004G156800 Sobic001G249700--Sobic004G156800 Sobic001G249700--Sobic002G256200 Sobic001G259000 Sobic001G259000 Sobic001G249700--Sobic001G259000 Sobic006G270600 Sobic006G270600 Sobic001G249700--Sobic006G270600 Sobic001G249700--Sobic001G168900 Sobic004G356900 Sobic004G356900 Sobic001G249700--Sobic004G356900 Sobic009G033900--Sobic006G183000 Sobic009G033900--Sobic002G268400 Sobic009G033900--Sobic001G249700 Sobic004G074300 Sobic004G074300 Sobic009G033900--Sobic004G074300 Sobic001G263000 Sobic001G263000 Sobic009G033900--Sobic001G263000 Sobic001G152000 Sobic001G152000 Sobic009G033900--Sobic001G152000 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic006G252100 Sobic006G252100 Sobic009G033900--Sobic006G252100 Sobic001G390500 Sobic001G390500 Sobic004G057800--Sobic001G390500 Sobic004G057800--Sobic009G033900 Sobic004G057800--Sobic001G136900 Sobic001G309100 Sobic001G309100 Sobic004G057800--Sobic001G309100 Sobic001G038100 Sobic001G038100 Sobic004G057800--Sobic001G038100 Sobic003G311000 Sobic003G311000 Sobic004G057800--Sobic003G311000 Sobic004G057800--Sobic007G205000 Sobic004G057800--Sobic001G370300 Sobic004G057800--Sobic006G183000
Octagon: transcription factors


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