Gene annotation
Transcriptome id Sobic.001G532100.1
Synonym FUS6, CSN1, ATSK31, EMB78, Sb01g049510, ATFUS6, SK31, COP11
Functional annotation proteasome subunit, putative, expressed
UniProt C5X110
Pfam PF01399 PF10602
Panther DB PTHR14145 PTHR14145:SF2
NCBI CDD KOG0686; COP9 signalosome, subunit CSN1
KEGG Orthology K12175; GPS1, COPS1, COP9 signalosome complex subunit 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G61140 : 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain
RAP-DB (Rice) LOC_Os03g02540.1 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a000229
Brachypodium PNT67745 , KQK23991 , KQJ97503
Barley HORVU6Hr1G027500.43 , HORVU6Hr1G027500.42 , HORVU4Hr1G086160.6 , HORVU4Hr1G086160.9 , HORVU4Hr1G086160.8 , HORVU4Hr1G086160.3 , HORVU4Hr1G086160.2 , HORVU4Hr1G086160.1 , HORVU4Hr1G086160.7 , HORVU4Hr1G086160.5 , HORVU4Hr1G086160.4 , HORVU1Hr1G048620.4 , HORVU1Hr1G048620.3 , HORVU1Hr1G048620.2 , HORVU1Hr1G048620.1 , HORVU6Hr1G027500.2 , HORVU6Hr1G027500.3 , HORVU6Hr1G027500.1 , HORVU6Hr1G027500.7 , HORVU6Hr1G027500.4 , HORVU6Hr1G027500.5 , HORVU6Hr1G027500.18 , HORVU6Hr1G027500.10 , HORVU6Hr1G027500.12 , HORVU6Hr1G027500.13 , HORVU6Hr1G027500.14 , HORVU6Hr1G027500.15 , HORVU6Hr1G027500.17 , HORVU6Hr1G027500.29 , HORVU6Hr1G027500.25 , HORVU6Hr1G027500.24 , HORVU6Hr1G027500.27 , HORVU6Hr1G027500.26 , HORVU6Hr1G027500.21 , HORVU6Hr1G027500.20 , HORVU6Hr1G027500.23 , HORVU6Hr1G027500.22 , HORVU6Hr1G027500.33 , HORVU6Hr1G027500.30 , HORVU6Hr1G027500.31 , HORVU6Hr1G027500.36 , HORVU6Hr1G027500.37 , HORVU6Hr1G027500.34 , HORVU6Hr1G027500.35 , HORVU6Hr1G027500.38
Wheat TraesCS4D02G350200 , TraesCS1A02G188800 , TraesCS4B02G356500 , TraesCS5A02G525900
Populus -


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cDNA sequences
Sobic.001G532100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
2 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
3 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
4 Sobic.001G285300 expressed protein -
5 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
6 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
7 Sobic.006G225300 expressed protein -
8 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
9 Sobic.003G273400 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed K00671: glycylpeptide N-tetradecanoyltransferase
10 Sobic.001G398600 anaphase-promoting complex subunit 11, putative, expressed K03358: anaphase-promoting complex subunit 11
11 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
12 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
13 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -
14 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
15 Sobic.006G183000 RING zinc finger protein, putative, expressed -
16 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
17 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
18 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
19 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
20 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha


Gene co-expression network
sample Sobic001G532100 Sobic001G532100 Sobic008G137600 Sobic008G137600 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic001G036700--Sobic001G532100 Sobic002G176400 Sobic002G176400 Sobic001G036700--Sobic002G176400 Sobic007G192100 Sobic007G192100 Sobic001G036700--Sobic007G192100 Sobic001G036700--Sobic001G285300 Sobic006G094600 Sobic006G094600 Sobic001G036700--Sobic006G094600 Sobic001G126200 Sobic001G126200 Sobic001G036700--Sobic001G126200 Sobic003G131300 Sobic003G131300 Sobic001G036700--Sobic003G131300 Sobic003G420700 Sobic003G420700 Sobic001G036700--Sobic003G420700 Sobic009G086200 Sobic009G086200 Sobic001G036700--Sobic009G086200 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic010G193800--Sobic001G532100 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G285300--Sobic001G036700 Sobic001G285300--Sobic001G126200 Sobic001G285300--Sobic003G420700 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600 Sobic001G294900--Sobic008G137600 Sobic003G349300 Sobic003G349300 Sobic001G294900--Sobic003G349300 Sobic001G294900--Sobic006G225300 Sobic001G294900--Sobic001G439600 Sobic006G183000 Sobic006G183000 Sobic001G294900--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic001G294900--Sobic006G109700 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic006G225300--Sobic001G294900 Sobic003G201900 Sobic003G201900 Sobic006G225300--Sobic003G201900 Sobic006G225300--Sobic010G193800 Sobic009G083200 Sobic009G083200 Sobic006G225300--Sobic009G083200 Sobic006G225300--Sobic001G439600 Sobic006G225300--Sobic002G256300 Sobic006G225300--Sobic001G532100 Sobic004G104900 Sobic004G104900 Sobic006G225300--Sobic004G104900 Sobic006G225300--Sobic009G135600 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic003G043400--Sobic002G428200 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic003G273400--Sobic008G137600 Sobic003G273400--Sobic001G532100 Sobic001G207500 Sobic001G207500 Sobic003G273400--Sobic001G207500 Sobic002G306400 Sobic002G306400 Sobic003G273400--Sobic002G306400 Sobic003G273400--Sobic001G294900 Sobic003G273400--Sobic002G341800 Sobic003G273400--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic003G273400--Sobic002G268400 Sobic002G280600 Sobic002G280600 Sobic003G273400--Sobic002G280600
Octagon: transcription factors


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