Gene annotation
Transcriptome id Sobic.004G057800.1
Synonym URED, Sb04g004840
Functional annotation URED, putative, expressed
UniProt C5XW55
Pfam PF01774
Panther DB PTHR33643 PTHR33643:SF1
NCBI CDD -
KEGG Orthology K03190; ureD, urease accessory protein
Gene Ontology GO:0016151; nickel cation binding GO:0006807nitrogen compound metabolic process


Orthologs (automatic annotation)
TAIR AT2G35035 : urease accessory protein D
RAP-DB (Rice) LOC_Os02g07670.1 : URED, putative, expressed
MaizeGDB (Corn) Zm00025a019101
Brachypodium -
Barley HORVU6Hr1G031610.13 , HORVU6Hr1G031610.12 , HORVU6Hr1G031610.20 , HORVU6Hr1G031610.21 , HORVU6Hr1G031610.22 , HORVU6Hr1G031610.23 , HORVU6Hr1G031610.24 , HORVU6Hr1G031610.25 , HORVU6Hr1G031610.26 , HORVU6Hr1G031610.27 , HORVU6Hr1G031610.28 , HORVU6Hr1G031610.29 , HORVU6Hr1G031610.1 , HORVU6Hr1G031610.3 , HORVU6Hr1G031610.2 , HORVU6Hr1G031610.5 , HORVU6Hr1G031610.4 , HORVU6Hr1G031610.7 , HORVU6Hr1G031610.6 , HORVU6Hr1G031610.9 , HORVU6Hr1G031610.8 , HORVU6Hr1G031610.33 , HORVU6Hr1G031610.32 , HORVU6Hr1G031610.17 , HORVU6Hr1G031610.30 , HORVU6Hr1G031610.11 , HORVU6Hr1G031610.10 , HORVU6Hr1G031610.35 , HORVU6Hr1G031610.34 , HORVU6Hr1G031610.19 , HORVU6Hr1G031610.18 , HORVU6Hr1G031610.15 , HORVU6Hr1G031610.14 , HORVU6Hr1G031610.31 , HORVU6Hr1G031610.16
Wheat TraesCS6B02G184600 , TraesCS6A02G156400 , TraesCS6A02G156400 , TraesCS6D02G146700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
2 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
3 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
4 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
5 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
6 Sobic.003G311000 histone-lysine N-methyltransferase SUVR3, putative, expressed -
7 Sobic.007G205000 zinc finger family protein, putative, expressed -
8 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
9 Sobic.006G183000 RING zinc finger protein, putative, expressed -
10 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
11 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
12 Sobic.010G012600 expressed protein -
13 Sobic.007G038800 expressed protein -
14 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
15 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
16 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
17 Sobic.003G189900 expressed protein -
18 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -
19 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
20 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1


Gene co-expression network
sample Sobic004G057800 Sobic004G057800 Sobic001G390500 Sobic001G390500 Sobic004G057800--Sobic001G390500 Sobic009G033900 Sobic009G033900 Sobic004G057800--Sobic009G033900 Sobic001G136900 Sobic001G136900 Sobic004G057800--Sobic001G136900 Sobic001G309100 Sobic001G309100 Sobic004G057800--Sobic001G309100 Sobic001G038100 Sobic001G038100 Sobic004G057800--Sobic001G038100 Sobic003G311000 Sobic003G311000 Sobic004G057800--Sobic003G311000 Sobic007G205000 Sobic007G205000 Sobic004G057800--Sobic007G205000 Sobic001G370300 Sobic001G370300 Sobic004G057800--Sobic001G370300 Sobic006G183000 Sobic006G183000 Sobic004G057800--Sobic006G183000 Sobic001G083600 Sobic001G083600 Sobic001G390500--Sobic001G083600 Sobic003G248500 Sobic003G248500 Sobic001G390500--Sobic003G248500 Sobic010G055500 Sobic010G055500 Sobic001G390500--Sobic010G055500 Sobic007G111100 Sobic007G111100 Sobic001G390500--Sobic007G111100 Sobic004G263900 Sobic004G263900 Sobic001G390500--Sobic004G263900 Sobic003G189900 Sobic003G189900 Sobic001G390500--Sobic003G189900 Sobic010G174800 Sobic010G174800 Sobic001G390500--Sobic010G174800 Sobic010G071200 Sobic010G071200 Sobic001G390500--Sobic010G071200 Sobic002G084300 Sobic002G084300 Sobic001G390500--Sobic002G084300 Sobic009G033900--Sobic006G183000 Sobic002G268400 Sobic002G268400 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic004G074300 Sobic004G074300 Sobic009G033900--Sobic004G074300 Sobic001G263000 Sobic001G263000 Sobic009G033900--Sobic001G263000 Sobic001G152000 Sobic001G152000 Sobic009G033900--Sobic001G152000 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic006G252100 Sobic006G252100 Sobic009G033900--Sobic006G252100 Sobic001G439600 Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic010G083700 Sobic010G083700 Sobic001G136900--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic001G309100--Sobic001G038100 Sobic003G024800 Sobic003G024800 Sobic001G309100--Sobic003G024800 Sobic003G101300 Sobic003G101300 Sobic001G309100--Sobic003G101300 Sobic001G309100--Sobic003G189900 Sobic001G309100--Sobic001G390500 Sobic001G309100--Sobic010G071200 Sobic003G437500 Sobic003G437500 Sobic001G309100--Sobic003G437500 Sobic001G350501 Sobic001G350501 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100 Sobic002G204000 Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G038100--Sobic001G309100 Sobic001G507400 Sobic001G507400 Sobic001G038100--Sobic001G507400 Sobic006G120800 Sobic006G120800 Sobic001G038100--Sobic006G120800 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic006G261100 Sobic006G261100 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic003G311000--Sobic001G390500 Sobic003G311000--Sobic001G309100 Sobic007G088900 Sobic007G088900 Sobic003G311000--Sobic007G088900 Sobic001G335201 Sobic001G335201 Sobic003G311000--Sobic001G335201 Sobic003G311000--Sobic003G189900 Sobic003G311000--Sobic004G057800 Sobic001G472100 Sobic001G472100 Sobic003G311000--Sobic001G472100 Sobic003G185200 Sobic003G185200 Sobic003G311000--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic003G311000--Sobic002G365100 Sobic001G028400 Sobic001G028400 Sobic007G205000--Sobic001G028400 Sobic006G278700 Sobic006G278700 Sobic007G205000--Sobic006G278700 Sobic007G118200 Sobic007G118200 Sobic007G205000--Sobic007G118200 Sobic009G198100 Sobic009G198100 Sobic007G205000--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic007G205000--Sobic010G033400 Sobic004G013600 Sobic004G013600 Sobic007G205000--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic007G205000--Sobic006G267300 Sobic001G010600 Sobic001G010600 Sobic007G205000--Sobic001G010600 Sobic004G350100 Sobic004G350100 Sobic007G205000--Sobic004G350100 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic010G247400 Sobic010G247400 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic001G370300--Sobic006G252100 Sobic001G370300--Sobic004G057800 Sobic006G183000--Sobic002G129000 Sobic001G294900 Sobic001G294900 Sobic006G183000--Sobic001G294900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic006G183000--Sobic002G268400 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600
Octagon: transcription factors


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