Gene annotation
Transcriptome id Sobic.003G440800.1
Synonym Sb03g047050
Functional annotation vacuolar protein sorting 55 family protein, putative, expressed
UniProt C5XJA8
Pfam PF04133
Panther DB PTHR12050
NCBI CDD KOG2174; Leptin receptor gene-related protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G11530 : Vacuolar protein sorting 55 (VPS55) family protein
RAP-DB (Rice) LOC_Os01g73570.2 : vacuolar protein sorting 55 family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT73656 , PNT73657 , KQK11690
Barley HORVU3Hr1G113090.8 , HORVU3Hr1G113090.5 , HORVU3Hr1G113090.4 , HORVU3Hr1G113090.7 , HORVU3Hr1G113090.6 , HORVU3Hr1G113090.1 , HORVU3Hr1G113090.3 , HORVU3Hr1G113090.2
Wheat TraesCSU02G053300 , TraesCSU02G053300 , TraesCS3D02G524500 , TraesCS3A02G516800
Populus -


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cDNA sequences
Sobic.003G440800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
2 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
3 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
4 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
5 Sobic.010G205300 secreted salivary protein, putative, expressed -
6 Sobic.003G386100 selenoprotein precursor, putative, expressed -
7 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
8 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
9 Sobic.005G033200 expressed protein -
10 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
11 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
12 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
13 Sobic.003G217400 zinc finger, C3HC4 type family protein, expressed -
14 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
15 Sobic.006G100600 histone H3, putative, expressed K11253: histone H3
16 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
17 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
18 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
19 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
20 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G440800 Sobic003G440800 Sobic001G428100 Sobic001G428100 Sobic003G440800--Sobic001G428100 Sobic001G314500 Sobic001G314500 Sobic003G440800--Sobic001G314500 Sobic009G004600 Sobic009G004600 Sobic003G440800--Sobic009G004600 Sobic004G130100 Sobic004G130100 Sobic003G440800--Sobic004G130100 Sobic010G205300 Sobic010G205300 Sobic003G440800--Sobic010G205300 Sobic003G386100 Sobic003G386100 Sobic003G440800--Sobic003G386100 Sobic009G198500 Sobic009G198500 Sobic003G440800--Sobic009G198500 Sobic001G501200 Sobic001G501200 Sobic003G440800--Sobic001G501200 Sobic005G033200 Sobic005G033200 Sobic003G440800--Sobic005G033200 Sobic006G281200 Sobic006G281200 Sobic001G428100--Sobic006G281200 Sobic001G502200 Sobic001G502200 Sobic001G428100--Sobic001G502200 Sobic001G428100--Sobic001G501200 Sobic004G060600 Sobic004G060600 Sobic001G428100--Sobic004G060600 Sobic001G428100--Sobic009G198500 Sobic001G428100--Sobic009G004600 Sobic001G428100--Sobic003G440800 Sobic001G315500 Sobic001G315500 Sobic001G428100--Sobic001G315500 Sobic003G117300 Sobic003G117300 Sobic001G428100--Sobic003G117300 Sobic006G212100 Sobic006G212100 Sobic001G314500--Sobic006G212100 Sobic001G314500--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic001G314500--Sobic007G168600 Sobic001G388200 Sobic001G388200 Sobic001G314500--Sobic001G388200 Sobic006G232200 Sobic006G232200 Sobic001G314500--Sobic006G232200 Sobic001G054200 Sobic001G054200 Sobic001G314500--Sobic001G054200 Sobic001G314500--Sobic009G004600 Sobic001G314500--Sobic010G205300 Sobic003G217400 Sobic003G217400 Sobic001G314500--Sobic003G217400 Sobic002G400000 Sobic002G400000 Sobic009G004600--Sobic002G400000 Sobic004G356900 Sobic004G356900 Sobic009G004600--Sobic004G356900 Sobic009G004600--Sobic003G217400 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic009G004600--Sobic001G314500 Sobic002G113900 Sobic002G113900 Sobic009G004600--Sobic002G113900 Sobic009G004600--Sobic010G205300 Sobic009G004600--Sobic007G168600 Sobic009G217900 Sobic009G217900 Sobic004G130100--Sobic009G217900 Sobic004G130100--Sobic006G232200 Sobic004G130100--Sobic001G501200 Sobic003G337000 Sobic003G337000 Sobic004G130100--Sobic003G337000 Sobic002G363100 Sobic002G363100 Sobic004G130100--Sobic002G363100 Sobic003G124800 Sobic003G124800 Sobic004G130100--Sobic003G124800 Sobic004G130100--Sobic009G198500 Sobic002G428200 Sobic002G428200 Sobic004G130100--Sobic002G428200 Sobic004G130100--Sobic001G428100 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic004G066800 Sobic004G066800 Sobic003G386100--Sobic004G066800 Sobic003G386100--Sobic009G198500 Sobic003G386100--Sobic003G124800 Sobic001G025600 Sobic001G025600 Sobic003G386100--Sobic001G025600 Sobic003G386100--Sobic006G232200 Sobic008G073300 Sobic008G073300 Sobic003G386100--Sobic008G073300 Sobic002G078400 Sobic002G078400 Sobic003G386100--Sobic002G078400 Sobic007G045600 Sobic007G045600 Sobic003G386100--Sobic007G045600 Sobic004G300900 Sobic004G300900 Sobic003G386100--Sobic004G300900 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic009G198500--Sobic002G078400 Sobic009G198500--Sobic004G300900 Sobic001G005900 Sobic001G005900 Sobic009G198500--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic009G198500--Sobic007G096700 Sobic009G198500--Sobic006G212100 Sobic001G501200--Sobic009G198500 Sobic001G501200--Sobic007G096700 Sobic001G501200--Sobic001G005900 Sobic001G501200--Sobic007G168600 Sobic001G501200--Sobic001G428100 Sobic001G501200--Sobic003G124800 Sobic001G501200--Sobic001G502200 Sobic001G501200--Sobic004G300900 Sobic001G501200--Sobic004G130100 Sobic003G264200 Sobic003G264200 Sobic005G033200--Sobic003G264200 Sobic005G033200--Sobic001G314500 Sobic005G033200--Sobic001G428100 Sobic005G033200--Sobic004G130100 Sobic005G111900 Sobic005G111900 Sobic005G033200--Sobic005G111900 Sobic005G033200--Sobic003G349300 Sobic005G033200--Sobic009G217900 Sobic005G033200--Sobic003G440800 Sobic006G049700 Sobic006G049700 Sobic005G033200--Sobic006G049700
Octagon: transcription factors


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