Gene annotation
Transcriptome id Sobic.009G217900.1
Synonym Sb09g027280
Functional annotation expressed protein
UniProt C5YUX9
Pfam PF01984
Panther DB PTHR10840 PTHR10840:SF0
NCBI CDD KOG3431; Apoptosis-related protein/predicted DNA-binding protein
KEGG Orthology K06875; PDCD5, programmed cell death protein 5
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G29850 : double-stranded DNA-binding family protein
RAP-DB (Rice) LOC_Os05g47446.1 : expressed protein
MaizeGDB (Corn) Zm00025a036497 , Zm00025a044435
Brachypodium KQK05069
Barley -
Wheat TraesCS1A02G368100 , TraesCS1B02G387000 , TraesCS1D02G374000
Populus -


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cDNA sequences
Sobic.009G217900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
2 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
3 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
4 Sobic.010G205300 secreted salivary protein, putative, expressed -
5 Sobic.005G033200 expressed protein -
6 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
7 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
8 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
9 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
10 Sobic.010G277800 lysM domain containing protein, putative, expressed -
11 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
12 Sobic.002G033400 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
13 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
14 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
15 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
16 Sobic.004G058200 cytidylyltransferase domain containing protein, expressed K00968: choline-phosphate cytidylyltransferase
17 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
19 Sobic.002G306900 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
20 Sobic.003G104700 Rer1 protein, putative, expressed -


Gene co-expression network
sample Sobic009G217900 Sobic009G217900 Sobic004G130100 Sobic004G130100 Sobic009G217900--Sobic004G130100 Sobic002G363100 Sobic002G363100 Sobic009G217900--Sobic002G363100 Sobic001G501200 Sobic001G501200 Sobic009G217900--Sobic001G501200 Sobic010G205300 Sobic010G205300 Sobic009G217900--Sobic010G205300 Sobic005G033200 Sobic005G033200 Sobic009G217900--Sobic005G033200 Sobic010G042100 Sobic010G042100 Sobic009G217900--Sobic010G042100 Sobic001G314500 Sobic001G314500 Sobic009G217900--Sobic001G314500 Sobic003G440800 Sobic003G440800 Sobic009G217900--Sobic003G440800 Sobic009G198500 Sobic009G198500 Sobic009G217900--Sobic009G198500 Sobic004G130100--Sobic009G217900 Sobic006G232200 Sobic006G232200 Sobic004G130100--Sobic006G232200 Sobic004G130100--Sobic001G501200 Sobic003G337000 Sobic003G337000 Sobic004G130100--Sobic003G337000 Sobic004G130100--Sobic002G363100 Sobic003G124800 Sobic003G124800 Sobic004G130100--Sobic003G124800 Sobic004G130100--Sobic009G198500 Sobic002G428200 Sobic002G428200 Sobic004G130100--Sobic002G428200 Sobic001G428100 Sobic001G428100 Sobic004G130100--Sobic001G428100 Sobic009G240900 Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic001G040800 Sobic001G040800 Sobic002G363100--Sobic001G040800 Sobic009G001400 Sobic009G001400 Sobic002G363100--Sobic009G001400 Sobic001G357300 Sobic001G357300 Sobic002G363100--Sobic001G357300 Sobic007G114200 Sobic007G114200 Sobic002G363100--Sobic007G114200 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic002G363100--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic002G363100--Sobic004G327300 Sobic001G501200--Sobic009G198500 Sobic007G096700 Sobic007G096700 Sobic001G501200--Sobic007G096700 Sobic001G501200--Sobic001G005900 Sobic007G168600 Sobic007G168600 Sobic001G501200--Sobic007G168600 Sobic001G501200--Sobic001G428100 Sobic001G501200--Sobic003G124800 Sobic001G502200 Sobic001G502200 Sobic001G501200--Sobic001G502200 Sobic004G300900 Sobic004G300900 Sobic001G501200--Sobic004G300900 Sobic001G501200--Sobic004G130100 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic003G264200 Sobic003G264200 Sobic005G033200--Sobic003G264200 Sobic005G033200--Sobic001G314500 Sobic005G033200--Sobic001G428100 Sobic005G033200--Sobic004G130100 Sobic005G111900 Sobic005G111900 Sobic005G033200--Sobic005G111900 Sobic005G033200--Sobic003G349300 Sobic005G033200--Sobic009G217900 Sobic005G033200--Sobic003G440800 Sobic006G049700 Sobic006G049700 Sobic005G033200--Sobic006G049700 Sobic002G045300 Sobic002G045300 Sobic010G042100--Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic010G042100--Sobic001G433400 Sobic003G117900 Sobic003G117900 Sobic010G042100--Sobic003G117900 Sobic009G135600 Sobic009G135600 Sobic010G042100--Sobic009G135600 Sobic002G385900 Sobic002G385900 Sobic010G042100--Sobic002G385900 Sobic003G367451 Sobic003G367451 Sobic010G042100--Sobic003G367451 Sobic003G253000 Sobic003G253000 Sobic010G042100--Sobic003G253000 Sobic004G020000 Sobic004G020000 Sobic010G042100--Sobic004G020000 Sobic001G461900 Sobic001G461900 Sobic010G042100--Sobic001G461900 Sobic006G212100 Sobic006G212100 Sobic001G314500--Sobic006G212100 Sobic001G314500--Sobic009G198500 Sobic001G314500--Sobic007G168600 Sobic001G388200 Sobic001G388200 Sobic001G314500--Sobic001G388200 Sobic001G314500--Sobic006G232200 Sobic001G054200 Sobic001G054200 Sobic001G314500--Sobic001G054200 Sobic009G004600 Sobic009G004600 Sobic001G314500--Sobic009G004600 Sobic001G314500--Sobic010G205300 Sobic003G217400 Sobic003G217400 Sobic001G314500--Sobic003G217400 Sobic003G440800--Sobic001G428100 Sobic003G440800--Sobic001G314500 Sobic003G440800--Sobic009G004600 Sobic003G440800--Sobic004G130100 Sobic003G440800--Sobic010G205300 Sobic003G386100 Sobic003G386100 Sobic003G440800--Sobic003G386100 Sobic003G440800--Sobic009G198500 Sobic003G440800--Sobic001G501200 Sobic003G440800--Sobic005G033200 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic002G400000 Sobic002G400000 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic009G198500--Sobic004G300900 Sobic009G198500--Sobic001G005900 Sobic009G198500--Sobic007G096700 Sobic009G198500--Sobic006G212100
Octagon: transcription factors


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