Gene annotation
Transcriptome id Sobic.002G306900.1
Synonym NDPK1, Sb02g033710
Functional annotation nucleoside diphosphate kinase, putative, expressed
UniProt C5X972
Pfam PF00334
Panther DB PTHR11349 PTHR11349:SF66
NCBI CDD KOG0888; Nucleoside diphosphate kinase
KEGG Orthology K00940; ndk, nucleoside-diphosphate kinase
Gene Ontology GO:0006241; CTP biosynthetic process GO:0006228UTP biosynthetic process GO:0006183GTP biosynthetic process GO:0006165nucleoside diphosphate phosphorylation GO:0004550nucleoside diphosphate kinase activity


Orthologs (automatic annotation)
TAIR AT4G09320 : Nucleoside diphosphate kinase family protein
RAP-DB (Rice) LOC_Os07g30970.1 : nucleoside diphosphate kinase, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT74961 , KQK16158 , KQJ97829
Barley HORVU4Hr1G044040.8 , HORVU1Hr1G055440.1 , HORVU1Hr1G055440.3 , HORVU1Hr1G055440.2
Wheat TraesCS1D02G219000 , TraesCS4B02G102400 , TraesCS4B02G102400 , TraesCS1B02G230300 , TraesCS4A02G213400 , TraesCS4A02G213400 , TraesCS4D02G099200 , TraesCS4D02G099200
Populus -


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cDNA sequences
Sobic.002G306900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
2 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
3 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
4 Sobic.002G355300 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
5 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
6 Sobic.001G357300 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
7 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
8 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
9 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
10 Sobic.004G236300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@shikimate kinase, putative, expressed K00891: aroK, shikimate kinase
11 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
12 Sobic.009G203100 expressed protein -
13 Sobic.006G212100 expressed protein -
14 Sobic.003G277000 expressed protein -
15 Sobic.003G402600 ubiquitin family domain containing protein, expressed K12160: SUMO, small ubiquitin-related modifier
16 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
17 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
18 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
19 Sobic.004G352500 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
20 Sobic.008G051900 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit


Gene co-expression network
sample Sobic002G306900 Sobic002G306900 Sobic001G040800 Sobic001G040800 Sobic002G306900--Sobic001G040800 Sobic002G363100 Sobic002G363100 Sobic002G306900--Sobic002G363100 Sobic009G217900 Sobic009G217900 Sobic002G306900--Sobic009G217900 Sobic002G355300 Sobic002G355300 Sobic002G306900--Sobic002G355300 Sobic001G388600 Sobic001G388600 Sobic002G306900--Sobic001G388600 Sobic001G357300 Sobic001G357300 Sobic002G306900--Sobic001G357300 Sobic004G130100 Sobic004G130100 Sobic002G306900--Sobic004G130100 Sobic009G001400 Sobic009G001400 Sobic002G306900--Sobic009G001400 Sobic003G216500 Sobic003G216500 Sobic002G306900--Sobic003G216500 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic003G253000 Sobic003G253000 Sobic001G040800--Sobic003G253000 Sobic001G040800--Sobic009G001400 Sobic001G040800--Sobic002G363100 Sobic002G202300 Sobic002G202300 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic001G040800--Sobic002G355300 Sobic007G114200 Sobic007G114200 Sobic001G040800--Sobic007G114200 Sobic007G088000 Sobic007G088000 Sobic001G040800--Sobic007G088000 Sobic009G240900 Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic002G363100--Sobic001G040800 Sobic002G363100--Sobic009G001400 Sobic002G363100--Sobic001G357300 Sobic002G363100--Sobic007G114200 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic002G363100--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic002G363100--Sobic004G327300 Sobic009G217900--Sobic004G130100 Sobic009G217900--Sobic002G363100 Sobic001G501200 Sobic001G501200 Sobic009G217900--Sobic001G501200 Sobic010G205300 Sobic010G205300 Sobic009G217900--Sobic010G205300 Sobic005G033200 Sobic005G033200 Sobic009G217900--Sobic005G033200 Sobic010G042100 Sobic010G042100 Sobic009G217900--Sobic010G042100 Sobic001G314500 Sobic001G314500 Sobic009G217900--Sobic001G314500 Sobic003G440800 Sobic003G440800 Sobic009G217900--Sobic003G440800 Sobic009G198500 Sobic009G198500 Sobic009G217900--Sobic009G198500 Sobic003G386000 Sobic003G386000 Sobic002G355300--Sobic003G386000 Sobic002G355300--Sobic001G040800 Sobic004G055200 Sobic004G055200 Sobic002G355300--Sobic004G055200 Sobic006G232200 Sobic006G232200 Sobic002G355300--Sobic006G232200 Sobic003G155400 Sobic003G155400 Sobic002G355300--Sobic003G155400 Sobic002G222900 Sobic002G222900 Sobic002G355300--Sobic002G222900 Sobic001G459200 Sobic001G459200 Sobic002G355300--Sobic001G459200 Sobic007G019100 Sobic007G019100 Sobic002G355300--Sobic007G019100 Sobic004G170400 Sobic004G170400 Sobic002G355300--Sobic004G170400 Sobic001G478000 Sobic001G478000 Sobic001G388600--Sobic001G478000 Sobic001G388600--Sobic004G130100 Sobic001G388600--Sobic004G327300 Sobic001G388600--Sobic002G363100 Sobic002G371100 Sobic002G371100 Sobic001G388600--Sobic002G371100 Sobic001G388600--Sobic001G005900 Sobic004G099900 Sobic004G099900 Sobic001G388600--Sobic004G099900 Sobic007G152400 Sobic007G152400 Sobic001G388600--Sobic007G152400 Sobic001G388600--Sobic003G216500 Sobic001G357300--Sobic002G363100 Sobic005G133900 Sobic005G133900 Sobic001G357300--Sobic005G133900 Sobic004G057200 Sobic004G057200 Sobic001G357300--Sobic004G057200 Sobic001G357300--Sobic002G306900 Sobic010G277800 Sobic010G277800 Sobic001G357300--Sobic010G277800 Sobic001G357300--Sobic009G217900 Sobic001G357300--Sobic009G001400 Sobic010G019300 Sobic010G019300 Sobic001G357300--Sobic010G019300 Sobic001G357300--Sobic009G240900 Sobic004G130100--Sobic009G217900 Sobic004G130100--Sobic006G232200 Sobic004G130100--Sobic001G501200 Sobic003G337000 Sobic003G337000 Sobic004G130100--Sobic003G337000 Sobic004G130100--Sobic002G363100 Sobic003G124800 Sobic003G124800 Sobic004G130100--Sobic003G124800 Sobic004G130100--Sobic009G198500 Sobic002G428200 Sobic002G428200 Sobic004G130100--Sobic002G428200 Sobic001G428100 Sobic001G428100 Sobic004G130100--Sobic001G428100 Sobic009G001400--Sobic007G114200 Sobic010G188100 Sobic010G188100 Sobic009G001400--Sobic010G188100 Sobic009G001400--Sobic001G040800 Sobic003G367451 Sobic003G367451 Sobic009G001400--Sobic003G367451 Sobic009G001400--Sobic002G363100 Sobic001G220400 Sobic001G220400 Sobic009G001400--Sobic001G220400 Sobic006G182100 Sobic006G182100 Sobic009G001400--Sobic006G182100 Sobic010G018400 Sobic010G018400 Sobic009G001400--Sobic010G018400 Sobic003G220600 Sobic003G220600 Sobic009G001400--Sobic003G220600 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic004G182500 Sobic004G182500 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic006G020900 Sobic006G020900 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700
Octagon: transcription factors


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