Gene annotation
Transcriptome id Sobic.008G051900.2
Synonym Sb08g004390, AVA-P4
Functional annotation expressed protein
UniProt C5YSN4
Pfam PF00137
Panther DB PTHR10263 PTHR10263:SF19
NCBI CDD KOG0232; Vacuolar H+-ATPase V0 sector, subunits c/c'
KEGG Orthology K02155; ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
Gene Ontology GO:0015078; proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT1G19910 : ATPase, F0/V0 complex, subunit C protein
RAP-DB (Rice) LOC_Os12g07140.1 : expressed protein
MaizeGDB (Corn) Zm00025a033973 , Zm00025a040967 , Zm00025a012873 , Zm00025a054030 , Zm00025a025760
Brachypodium KQK08111 , KQJ89223 , KQJ92077
Barley HORVU5Hr1G036250.4 , HORVU5Hr1G036250.3 , HORVU5Hr1G036250.2 , HORVU5Hr1G036250.1 , HORVU4Hr1G019840.1 , HORVU4Hr1G019840.2 , HORVU4Hr1G019840.3 , HORVU1Hr1G002500.4 , HORVU1Hr1G002500.1 , HORVU1Hr1G002500.2 , HORVU1Hr1G002500.3
Wheat TraesCS4B02G110500 , TraesCS4A02G206900 , TraesCS1B02G022800 , TraesCS5D02G130000 , TraesCS1A02G019000 , TraesCS1D02G018300 , TraesCS5B02G117600 , TraesCS4D02G108200 , TraesCS5A02G118600
Populus -


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cDNA sequences
Sobic.008G051900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
2 Sobic.004G037700 AIG2-like family domain containing protein, expressed -
3 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
4 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
5 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
6 Sobic.002G260200 - -
7 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
8 Sobic.003G305100 expressed protein -
9 Sobic.005G055000 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
10 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
11 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
12 Sobic.009G001900 expressed protein -
13 Sobic.009G168000 selT-like protein precursor, putative, expressed -
14 Sobic.003G217100 Yip1 domain containing protein, expressed -
15 Sobic.002G262200 expressed protein -
16 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
17 Sobic.010G038700 expressed protein -
18 Sobic.004G294900 expressed protein -
19 Sobic.008G051800 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
20 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12


Gene co-expression network
sample Sobic008G051900 Sobic008G051900 Sobic010G018400 Sobic010G018400 Sobic008G051900--Sobic010G018400 Sobic004G037700 Sobic004G037700 Sobic008G051900--Sobic004G037700 Sobic001G112400 Sobic001G112400 Sobic008G051900--Sobic001G112400 Sobic002G073800 Sobic002G073800 Sobic008G051900--Sobic002G073800 Sobic004G202100 Sobic004G202100 Sobic008G051900--Sobic004G202100 Sobic002G260200 Sobic002G260200 Sobic008G051900--Sobic002G260200 Sobic002G309500 Sobic002G309500 Sobic008G051900--Sobic002G309500 Sobic003G305100 Sobic003G305100 Sobic008G051900--Sobic003G305100 Sobic005G055000 Sobic005G055000 Sobic008G051900--Sobic005G055000 Sobic008G129400 Sobic008G129400 Sobic010G018400--Sobic008G129400 Sobic003G368500 Sobic003G368500 Sobic010G018400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic010G018400--Sobic003G155400 Sobic009G176000 Sobic009G176000 Sobic010G018400--Sobic009G176000 Sobic007G051000 Sobic007G051000 Sobic010G018400--Sobic007G051000 Sobic010G154700 Sobic010G154700 Sobic010G018400--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic010G018400--Sobic001G132100 Sobic001G048832 Sobic001G048832 Sobic010G018400--Sobic001G048832 Sobic001G445800 Sobic001G445800 Sobic010G018400--Sobic001G445800 Sobic004G037700--Sobic010G018400 Sobic004G037700--Sobic008G051900 Sobic004G037700--Sobic002G073800 Sobic004G037700--Sobic008G129400 Sobic009G062000 Sobic009G062000 Sobic004G037700--Sobic009G062000 Sobic004G037700--Sobic003G305100 Sobic009G168000 Sobic009G168000 Sobic004G037700--Sobic009G168000 Sobic004G037700--Sobic009G176000 Sobic003G277000 Sobic003G277000 Sobic004G037700--Sobic003G277000 Sobic002G262200 Sobic002G262200 Sobic001G112400--Sobic002G262200 Sobic001G443200 Sobic001G443200 Sobic001G112400--Sobic001G443200 Sobic005G184200 Sobic005G184200 Sobic001G112400--Sobic005G184200 Sobic001G378200 Sobic001G378200 Sobic001G112400--Sobic001G378200 Sobic004G347600 Sobic004G347600 Sobic001G112400--Sobic004G347600 Sobic004G039400 Sobic004G039400 Sobic001G112400--Sobic004G039400 Sobic004G344800 Sobic004G344800 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G465400 Sobic001G465400 Sobic001G112400--Sobic001G465400 Sobic002G073800--Sobic010G018400 Sobic009G212200 Sobic009G212200 Sobic002G073800--Sobic009G212200 Sobic008G127500 Sobic008G127500 Sobic002G073800--Sobic008G127500 Sobic002G073800--Sobic009G062000 Sobic001G095632 Sobic001G095632 Sobic002G073800--Sobic001G095632 Sobic001G304400 Sobic001G304400 Sobic002G073800--Sobic001G304400 Sobic002G073800--Sobic009G176000 Sobic002G356400 Sobic002G356400 Sobic002G073800--Sobic002G356400 Sobic001G034700 Sobic001G034700 Sobic002G073800--Sobic001G034700 Sobic001G031900 Sobic001G031900 Sobic004G202100--Sobic001G031900 Sobic002G395000 Sobic002G395000 Sobic004G202100--Sobic002G395000 Sobic004G262300 Sobic004G262300 Sobic004G202100--Sobic004G262300 Sobic006G058900 Sobic006G058900 Sobic004G202100--Sobic006G058900 Sobic001G282500 Sobic001G282500 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic004G202100--Sobic002G309500 Sobic004G297700 Sobic004G297700 Sobic004G202100--Sobic004G297700 Sobic007G023400 Sobic007G023400 Sobic004G202100--Sobic007G023400 Sobic007G013900 Sobic007G013900 Sobic002G260200--Sobic007G013900 Sobic006G013000 Sobic006G013000 Sobic002G260200--Sobic006G013000 Sobic001G031800 Sobic001G031800 Sobic002G260200--Sobic001G031800 Sobic004G159000 Sobic004G159000 Sobic002G260200--Sobic004G159000 Sobic002G296200 Sobic002G296200 Sobic002G260200--Sobic002G296200 Sobic002G260200--Sobic002G262200 Sobic002G260200--Sobic003G305100 Sobic009G001900 Sobic009G001900 Sobic002G260200--Sobic009G001900 Sobic004G260200 Sobic004G260200 Sobic002G260200--Sobic004G260200 Sobic002G309500--Sobic006G058900 Sobic002G309500--Sobic004G202100 Sobic001G050700 Sobic001G050700 Sobic002G309500--Sobic001G050700 Sobic007G159700 Sobic007G159700 Sobic002G309500--Sobic007G159700 Sobic002G309500--Sobic002G395000 Sobic002G309500--Sobic001G031900 Sobic002G309500--Sobic004G262300 Sobic003G322300 Sobic003G322300 Sobic002G309500--Sobic003G322300 Sobic002G309500--Sobic004G297700 Sobic003G305100--Sobic003G277000 Sobic003G305100--Sobic006G231500 Sobic007G091000 Sobic007G091000 Sobic003G305100--Sobic007G091000 Sobic003G305100--Sobic009G062000 Sobic003G305100--Sobic002G296200 Sobic003G305100--Sobic001G095632 Sobic003G305100--Sobic002G260200 Sobic009G024500 Sobic009G024500 Sobic003G305100--Sobic009G024500 Sobic001G538600 Sobic001G538600 Sobic003G305100--Sobic001G538600 Sobic005G055000--Sobic008G051900 Sobic006G237200 Sobic006G237200 Sobic005G055000--Sobic006G237200 Sobic004G028000 Sobic004G028000 Sobic005G055000--Sobic004G028000 Sobic003G216500 Sobic003G216500 Sobic005G055000--Sobic003G216500 Sobic002G410700 Sobic002G410700 Sobic005G055000--Sobic002G410700 Sobic003G325500 Sobic003G325500 Sobic005G055000--Sobic003G325500 Sobic009G207100 Sobic009G207100 Sobic005G055000--Sobic009G207100 Sobic005G055000--Sobic009G168000 Sobic001G526100 Sobic001G526100 Sobic005G055000--Sobic001G526100
Octagon: transcription factors


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