Gene annotation
Transcriptome id Sobic.005G055000.1
Synonym AVA-2PE, ATVHA-C2, Sb05g004510, AVA-P2
Functional annotation expressed protein
UniProt C5Y5P6
Pfam PF00137
Panther DB PTHR10263 PTHR10263:SF19
NCBI CDD KOG0232; Vacuolar H+-ATPase V0 sector, subunits c/c'
KEGG Orthology K02155; ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
Gene Ontology GO:0015078; proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT1G19910 : ATPase, F0/V0 complex, subunit C protein
RAP-DB (Rice) LOC_Os12g07140.1 : expressed protein
MaizeGDB (Corn) Zm00025a033973 , Zm00025a040967 , Zm00025a012873 , Zm00025a054030 , Zm00025a025760
Brachypodium KQJ99823 , KQK08111 , KQJ89223 , KQJ92077
Barley HORVU5Hr1G036250.4 , HORVU5Hr1G036250.3 , HORVU5Hr1G036250.2 , HORVU5Hr1G036250.1 , HORVU4Hr1G019840.1 , HORVU4Hr1G019840.2 , HORVU4Hr1G019840.3 , HORVU1Hr1G002500.4 , HORVU1Hr1G002500.5 , HORVU1Hr1G002500.1 , HORVU1Hr1G002500.2 , HORVU1Hr1G002500.3
Wheat TraesCS4B02G110500 , TraesCS4A02G206900 , TraesCS1B02G022800 , TraesCS5D02G130000 , TraesCS1A02G019000 , TraesCS5B02G117600 , TraesCS4D02G108200 , TraesCS5A02G118600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G055000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G051900 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
2 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
3 Sobic.004G028000 expressed protein -
4 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
5 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
6 Sobic.003G325500 ICE-like protease p20 domain containing protein, putative, expressed -
7 Sobic.009G207100 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
8 Sobic.009G168000 selT-like protein precursor, putative, expressed -
9 Sobic.001G526100 uncharacterized Cys-rich domain containing protein, putative, expressed -
10 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
11 Sobic.003G305100 expressed protein -
12 Sobic.010G065400 X0001, putative, expressed -
13 Sobic.004G182500 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed K18121: glyoxylate/succinic semialdehyde reductase
14 Sobic.008G118600 riboflavin synthase alpha chain, putative, expressed K00793: ribE, riboflavin synthase
15 Sobic.001G307900 LYR motif containing protein, putative, expressed K18167: succinate dehydrogenase assembly factor 1
16 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
17 Sobic.007G079700 pentatricopeptide, putative, expressed -
18 Sobic.003G277000 expressed protein -
19 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
20 Sobic.006G262900 expressed protein -


Gene co-expression network
sample Sobic005G055000 Sobic005G055000 Sobic008G051900 Sobic008G051900 Sobic005G055000--Sobic008G051900 Sobic006G237200 Sobic006G237200 Sobic005G055000--Sobic006G237200 Sobic004G028000 Sobic004G028000 Sobic005G055000--Sobic004G028000 Sobic003G216500 Sobic003G216500 Sobic005G055000--Sobic003G216500 Sobic002G410700 Sobic002G410700 Sobic005G055000--Sobic002G410700 Sobic003G325500 Sobic003G325500 Sobic005G055000--Sobic003G325500 Sobic009G207100 Sobic009G207100 Sobic005G055000--Sobic009G207100 Sobic009G168000 Sobic009G168000 Sobic005G055000--Sobic009G168000 Sobic001G526100 Sobic001G526100 Sobic005G055000--Sobic001G526100 Sobic010G018400 Sobic010G018400 Sobic008G051900--Sobic010G018400 Sobic004G037700 Sobic004G037700 Sobic008G051900--Sobic004G037700 Sobic001G112400 Sobic001G112400 Sobic008G051900--Sobic001G112400 Sobic002G073800 Sobic002G073800 Sobic008G051900--Sobic002G073800 Sobic004G202100 Sobic004G202100 Sobic008G051900--Sobic004G202100 Sobic002G260200 Sobic002G260200 Sobic008G051900--Sobic002G260200 Sobic002G309500 Sobic002G309500 Sobic008G051900--Sobic002G309500 Sobic003G305100 Sobic003G305100 Sobic008G051900--Sobic003G305100 Sobic008G051900--Sobic005G055000 Sobic006G237200--Sobic002G410700 Sobic009G256000 Sobic009G256000 Sobic006G237200--Sobic009G256000 Sobic008G021200 Sobic008G021200 Sobic006G237200--Sobic008G021200 Sobic007G161200 Sobic007G161200 Sobic006G237200--Sobic007G161200 Sobic006G237200--Sobic003G216500 Sobic002G186300 Sobic002G186300 Sobic006G237200--Sobic002G186300 Sobic006G020900 Sobic006G020900 Sobic006G237200--Sobic006G020900 Sobic005G018800 Sobic005G018800 Sobic006G237200--Sobic005G018800 Sobic001G110300 Sobic001G110300 Sobic006G237200--Sobic001G110300 Sobic004G060600 Sobic004G060600 Sobic004G028000--Sobic004G060600 Sobic004G028000--Sobic005G055000 Sobic001G417900 Sobic001G417900 Sobic004G028000--Sobic001G417900 Sobic004G028000--Sobic003G325500 Sobic007G117500 Sobic007G117500 Sobic004G028000--Sobic007G117500 Sobic004G202700 Sobic004G202700 Sobic004G028000--Sobic004G202700 Sobic003G299000 Sobic003G299000 Sobic004G028000--Sobic003G299000 Sobic003G369500 Sobic003G369500 Sobic004G028000--Sobic003G369500 Sobic001G263000 Sobic001G263000 Sobic004G028000--Sobic001G263000 Sobic003G216500--Sobic002G410700 Sobic004G182500 Sobic004G182500 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic002G410700--Sobic003G216500 Sobic002G410700--Sobic006G237200 Sobic002G410700--Sobic009G256000 Sobic008G150300 Sobic008G150300 Sobic002G410700--Sobic008G150300 Sobic002G410700--Sobic001G473400 Sobic002G410700--Sobic006G020900 Sobic002G410700--Sobic009G240700 Sobic002G410700--Sobic007G161200 Sobic002G410700--Sobic003G170300 Sobic001G428200 Sobic001G428200 Sobic003G325500--Sobic001G428200 Sobic003G003000 Sobic003G003000 Sobic003G325500--Sobic003G003000 Sobic006G206700 Sobic006G206700 Sobic003G325500--Sobic006G206700 Sobic001G087900 Sobic001G087900 Sobic003G325500--Sobic001G087900 Sobic003G325500--Sobic004G028000 Sobic003G417000 Sobic003G417000 Sobic003G325500--Sobic003G417000 Sobic003G325500--Sobic003G369500 Sobic003G325500--Sobic005G055000 Sobic006G281200 Sobic006G281200 Sobic003G325500--Sobic006G281200 Sobic002G133100 Sobic002G133100 Sobic009G207100--Sobic002G133100 Sobic001G215500 Sobic001G215500 Sobic009G207100--Sobic001G215500 Sobic007G171950 Sobic007G171950 Sobic009G207100--Sobic007G171950 Sobic001G202400 Sobic001G202400 Sobic009G207100--Sobic001G202400 Sobic009G207100--Sobic005G055000 Sobic002G333100 Sobic002G333100 Sobic009G207100--Sobic002G333100 Sobic009G207100--Sobic001G263000 Sobic003G071600 Sobic003G071600 Sobic009G207100--Sobic003G071600 Sobic004G224700 Sobic004G224700 Sobic009G207100--Sobic004G224700 Sobic002G078400 Sobic002G078400 Sobic009G168000--Sobic002G078400 Sobic007G091000 Sobic007G091000 Sobic009G168000--Sobic007G091000 Sobic010G065400 Sobic010G065400 Sobic009G168000--Sobic010G065400 Sobic006G109700 Sobic006G109700 Sobic009G168000--Sobic006G109700 Sobic008G127500 Sobic008G127500 Sobic009G168000--Sobic008G127500 Sobic009G168000--Sobic003G305100 Sobic010G038700 Sobic010G038700 Sobic009G168000--Sobic010G038700 Sobic001G502200 Sobic001G502200 Sobic009G168000--Sobic001G502200 Sobic003G277000 Sobic003G277000 Sobic009G168000--Sobic003G277000 Sobic001G309500 Sobic001G309500 Sobic001G526100--Sobic001G309500 Sobic001G526100--Sobic002G078400 Sobic004G157800 Sobic004G157800 Sobic001G526100--Sobic004G157800 Sobic001G064800 Sobic001G064800 Sobic001G526100--Sobic001G064800 Sobic001G526100--Sobic010G065400 Sobic004G196300 Sobic004G196300 Sobic001G526100--Sobic004G196300 Sobic003G381000 Sobic003G381000 Sobic001G526100--Sobic003G381000 Sobic003G217100 Sobic003G217100 Sobic001G526100--Sobic003G217100 Sobic002G368400 Sobic002G368400 Sobic001G526100--Sobic002G368400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.