Gene annotation
Transcriptome id Sobic.003G325500.1
Synonym ATMCP2B, AMC6, MC5, ATMC5, Sb03g037160
Functional annotation ICE-like protease p20 domain containing protein, putative, expressed
UniProt A0A125QUI1 , C5XMG1
Pfam PF00656
Panther DB PTHR31810 PTHR31810:SF7
NCBI CDD KOG1546; Metacaspase involved in regulation of apoptosis
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G79330 : metacaspase 5
RAP-DB (Rice) LOC_Os01g58580.1 : ICE-like protease p20 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a037861 , Zm00025a027196
Brachypodium KQK10177 , KQK05597
Barley HORVU3Hr1G078270.1 , HORVU3Hr1G078270.3 , HORVU3Hr1G078270.2
Wheat TraesCS3B02G359200 , TraesCS3A02G328800 , TraesCS3D02G322600 , TraesCS2B02G504700
Populus -


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cDNA sequences
Sobic.003G325500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G428200 expressed protein -
2 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
3 Sobic.006G206700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@leucine rich repeat containing protein, expressed -
4 Sobic.001G087900 expressed protein -
5 Sobic.004G028000 expressed protein -
6 Sobic.003G417000 esterase, putative, expressed -
7 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
8 Sobic.005G055000 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
9 Sobic.006G281200 csAtPR5, putative, expressed -
10 Sobic.004G351500 - -
11 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
12 Sobic.005G000100 monoglyceride lipase, putative, expressed -
13 Sobic.009G168000 selT-like protein precursor, putative, expressed -
14 Sobic.001G128100 expressed protein -
15 Sobic.009G062000 ribosomal protein L51, putative, expressed K03946: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
16 Sobic.004G182500 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed K18121: glyoxylate/succinic semialdehyde reductase
17 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
18 Sobic.004G272300 expressed protein -
19 Sobic.007G117500 stromal cell-derived factor 2-like protein precursor, putative, expressed -
20 Sobic.001G284600 xyloglucan endotransglucosylase/hydrolase 29(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase


Gene co-expression network
sample Sobic003G325500 Sobic003G325500 Sobic001G428200 Sobic001G428200 Sobic003G325500--Sobic001G428200 Sobic003G003000 Sobic003G003000 Sobic003G325500--Sobic003G003000 Sobic006G206700 Sobic006G206700 Sobic003G325500--Sobic006G206700 Sobic001G087900 Sobic001G087900 Sobic003G325500--Sobic001G087900 Sobic004G028000 Sobic004G028000 Sobic003G325500--Sobic004G028000 Sobic003G417000 Sobic003G417000 Sobic003G325500--Sobic003G417000 Sobic003G369500 Sobic003G369500 Sobic003G325500--Sobic003G369500 Sobic005G055000 Sobic005G055000 Sobic003G325500--Sobic005G055000 Sobic006G281200 Sobic006G281200 Sobic003G325500--Sobic006G281200 Sobic001G428200--Sobic001G087900 Sobic004G351500 Sobic004G351500 Sobic001G428200--Sobic004G351500 Sobic009G131100 Sobic009G131100 Sobic001G428200--Sobic009G131100 Sobic001G428200--Sobic003G369500 Sobic001G353600 Sobic001G353600 Sobic001G428200--Sobic001G353600 Sobic001G428200--Sobic003G325500 Sobic004G225500 Sobic004G225500 Sobic001G428200--Sobic004G225500 Sobic004G060600 Sobic004G060600 Sobic001G428200--Sobic004G060600 Sobic009G198500 Sobic009G198500 Sobic001G428200--Sobic009G198500 Sobic001G129400 Sobic001G129400 Sobic003G003000--Sobic001G129400 Sobic001G132900 Sobic001G132900 Sobic003G003000--Sobic001G132900 Sobic003G003000--Sobic006G281200 Sobic010G018000 Sobic010G018000 Sobic003G003000--Sobic010G018000 Sobic001G008800 Sobic001G008800 Sobic003G003000--Sobic001G008800 Sobic004G018400 Sobic004G018400 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic006G206700--Sobic003G325500 Sobic009G036800 Sobic009G036800 Sobic006G206700--Sobic009G036800 Sobic006G206700--Sobic001G428200 Sobic001G128100 Sobic001G128100 Sobic006G206700--Sobic001G128100 Sobic003G253800 Sobic003G253800 Sobic006G206700--Sobic003G253800 Sobic004G209900 Sobic004G209900 Sobic006G206700--Sobic004G209900 Sobic006G206700--Sobic003G369500 Sobic006G206700--Sobic009G131100 Sobic006G168300 Sobic006G168300 Sobic006G206700--Sobic006G168300 Sobic001G087900--Sobic004G351500 Sobic001G087900--Sobic001G428200 Sobic001G087900--Sobic001G353600 Sobic001G087900--Sobic009G131100 Sobic001G087900--Sobic009G198500 Sobic004G272300 Sobic004G272300 Sobic001G087900--Sobic004G272300 Sobic004G026400 Sobic004G026400 Sobic001G087900--Sobic004G026400 Sobic001G095632 Sobic001G095632 Sobic001G087900--Sobic001G095632 Sobic001G034700 Sobic001G034700 Sobic001G087900--Sobic001G034700 Sobic004G028000--Sobic004G060600 Sobic004G028000--Sobic005G055000 Sobic001G417900 Sobic001G417900 Sobic004G028000--Sobic001G417900 Sobic004G028000--Sobic003G325500 Sobic007G117500 Sobic007G117500 Sobic004G028000--Sobic007G117500 Sobic004G202700 Sobic004G202700 Sobic004G028000--Sobic004G202700 Sobic003G299000 Sobic003G299000 Sobic004G028000--Sobic003G299000 Sobic004G028000--Sobic003G369500 Sobic001G263000 Sobic001G263000 Sobic004G028000--Sobic001G263000 Sobic003G417000--Sobic003G325500 Sobic004G114400 Sobic004G114400 Sobic003G417000--Sobic004G114400 Sobic003G417000--Sobic001G428200 Sobic005G000100 Sobic005G000100 Sobic003G417000--Sobic005G000100 Sobic006G242900 Sobic006G242900 Sobic003G417000--Sobic006G242900 Sobic010G122800 Sobic010G122800 Sobic003G417000--Sobic010G122800 Sobic004G209500 Sobic004G209500 Sobic003G417000--Sobic004G209500 Sobic005G064800 Sobic005G064800 Sobic003G417000--Sobic005G064800 Sobic003G199600 Sobic003G199600 Sobic003G417000--Sobic003G199600 Sobic003G369500--Sobic004G060600 Sobic003G077900 Sobic003G077900 Sobic003G369500--Sobic003G077900 Sobic003G369500--Sobic009G131100 Sobic003G369500--Sobic001G428200 Sobic007G091000 Sobic007G091000 Sobic003G369500--Sobic007G091000 Sobic001G428100 Sobic001G428100 Sobic003G369500--Sobic001G428100 Sobic007G044300 Sobic007G044300 Sobic003G369500--Sobic007G044300 Sobic010G267500 Sobic010G267500 Sobic003G369500--Sobic010G267500 Sobic003G277000 Sobic003G277000 Sobic003G369500--Sobic003G277000 Sobic008G051900 Sobic008G051900 Sobic005G055000--Sobic008G051900 Sobic006G237200 Sobic006G237200 Sobic005G055000--Sobic006G237200 Sobic005G055000--Sobic004G028000 Sobic003G216500 Sobic003G216500 Sobic005G055000--Sobic003G216500 Sobic002G410700 Sobic002G410700 Sobic005G055000--Sobic002G410700 Sobic005G055000--Sobic003G325500 Sobic009G207100 Sobic009G207100 Sobic005G055000--Sobic009G207100 Sobic009G168000 Sobic009G168000 Sobic005G055000--Sobic009G168000 Sobic001G526100 Sobic001G526100 Sobic005G055000--Sobic001G526100 Sobic006G281200--Sobic001G428100 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic006G281200--Sobic009G131100 Sobic006G281200--Sobic007G091000 Sobic001G404100 Sobic001G404100 Sobic006G281200--Sobic001G404100 Sobic008G100000 Sobic008G100000 Sobic006G281200--Sobic008G100000 Sobic003G367900 Sobic003G367900 Sobic006G281200--Sobic003G367900 Sobic009G130400 Sobic009G130400 Sobic006G281200--Sobic009G130400
Octagon: transcription factors


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