Gene annotation
Transcriptome id Sobic.007G117500.1
Synonym AtSDF2, ATSDL, Sb07g019360, SDF2
Functional annotation stromal cell-derived factor 2-like protein precursor, putative, expressed
UniProt C5YKL4
Pfam -
Panther DB PTHR10050 PTHR10050:SF33
NCBI CDD KOG3358; Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25110 : stromal cell-derived factor 2-like protein precursor
RAP-DB (Rice) LOC_Os08g17680.1 : stromal cell-derived factor 2-like protein precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT67027 , PNT67029 , PNT67028
Barley HORVU7Hr1G079030.1 , HORVU7Hr1G079030.2 , HORVU7Hr1G079030.3
Wheat TraesCS7A02G330300 , TraesCS7D02G327100 , TraesCS7B02G231000
Populus -


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cDNA sequences
Sobic.007G117500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
2 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
3 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
4 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
5 Sobic.004G028000 expressed protein -
6 Sobic.008G088830 - -
7 Sobic.004G124100 EMB1303, putative, expressed -
8 Sobic.001G048200 elongation factor P, putative, expressed -
9 Sobic.001G067300 histidinol dehydrogenase, chloroplast precursor, putative, expressed K00013: histidinol dehydrogenase
10 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
11 Sobic.005G105500 expressed protein -
12 Sobic.003G325500 ICE-like protease p20 domain containing protein, putative, expressed -
13 Sobic.001G230100 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
14 Sobic.009G174000 expressed protein -
15 Sobic.010G123400 GRAM and C2 domains containing protein, putative, expressed -
16 Sobic.002G193400 lipase, putative, expressed K18875: enhanced disease susceptibility 1 protein
17 Sobic.009G209100 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
18 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
19 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
20 Sobic.006G280600 tubulin folding cofactor B, putative, expressed K17262: TBCB, CKAP1, tubulin-specific chaperone B


Gene co-expression network
sample Sobic007G117500 Sobic007G117500 Sobic006G244700 Sobic006G244700 Sobic007G117500--Sobic006G244700 Sobic002G209400 Sobic002G209400 Sobic007G117500--Sobic002G209400 Sobic006G281500 Sobic006G281500 Sobic007G117500--Sobic006G281500 Sobic001G263000 Sobic001G263000 Sobic007G117500--Sobic001G263000 Sobic004G028000 Sobic004G028000 Sobic007G117500--Sobic004G028000 Sobic008G088830 Sobic008G088830 Sobic007G117500--Sobic008G088830 Sobic004G124100 Sobic004G124100 Sobic007G117500--Sobic004G124100 Sobic001G048200 Sobic001G048200 Sobic007G117500--Sobic001G048200 Sobic001G067300 Sobic001G067300 Sobic007G117500--Sobic001G067300 Sobic006G244700--Sobic001G263000 Sobic006G244700--Sobic001G048200 Sobic005G044800 Sobic005G044800 Sobic006G244700--Sobic005G044800 Sobic007G188300 Sobic007G188300 Sobic006G244700--Sobic007G188300 Sobic004G130900 Sobic004G130900 Sobic006G244700--Sobic004G130900 Sobic009G004600 Sobic009G004600 Sobic006G244700--Sobic009G004600 Sobic003G261400 Sobic003G261400 Sobic006G244700--Sobic003G261400 Sobic006G244700--Sobic002G209400 Sobic004G081800 Sobic004G081800 Sobic006G244700--Sobic004G081800 Sobic002G209400--Sobic001G263000 Sobic002G209400--Sobic006G244700 Sobic004G232800 Sobic004G232800 Sobic002G209400--Sobic004G232800 Sobic007G061400 Sobic007G061400 Sobic002G209400--Sobic007G061400 Sobic002G209400--Sobic007G188300 Sobic010G057900 Sobic010G057900 Sobic002G209400--Sobic010G057900 Sobic002G111200 Sobic002G111200 Sobic002G209400--Sobic002G111200 Sobic005G111900 Sobic005G111900 Sobic002G209400--Sobic005G111900 Sobic001G014800 Sobic001G014800 Sobic002G209400--Sobic001G014800 Sobic006G281500--Sobic001G263000 Sobic009G227900 Sobic009G227900 Sobic006G281500--Sobic009G227900 Sobic009G081500 Sobic009G081500 Sobic006G281500--Sobic009G081500 Sobic002G317300 Sobic002G317300 Sobic006G281500--Sobic002G317300 Sobic005G105500 Sobic005G105500 Sobic006G281500--Sobic005G105500 Sobic002G259400 Sobic002G259400 Sobic006G281500--Sobic002G259400 Sobic007G188600 Sobic007G188600 Sobic006G281500--Sobic007G188600 Sobic003G119400 Sobic003G119400 Sobic006G281500--Sobic003G119400 Sobic010G085200 Sobic010G085200 Sobic006G281500--Sobic010G085200 Sobic001G263000--Sobic009G004600 Sobic001G263000--Sobic006G244700 Sobic009G033900 Sobic009G033900 Sobic001G263000--Sobic009G033900 Sobic001G263000--Sobic002G209400 Sobic002G268400 Sobic002G268400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic004G074300 Sobic004G074300 Sobic001G263000--Sobic004G074300 Sobic004G356900 Sobic004G356900 Sobic001G263000--Sobic004G356900 Sobic001G263000--Sobic010G057900 Sobic004G060600 Sobic004G060600 Sobic004G028000--Sobic004G060600 Sobic005G055000 Sobic005G055000 Sobic004G028000--Sobic005G055000 Sobic001G417900 Sobic001G417900 Sobic004G028000--Sobic001G417900 Sobic003G325500 Sobic003G325500 Sobic004G028000--Sobic003G325500 Sobic004G028000--Sobic007G117500 Sobic004G202700 Sobic004G202700 Sobic004G028000--Sobic004G202700 Sobic003G299000 Sobic003G299000 Sobic004G028000--Sobic003G299000 Sobic003G369500 Sobic003G369500 Sobic004G028000--Sobic003G369500 Sobic004G028000--Sobic001G263000 Sobic001G230100 Sobic001G230100 Sobic008G088830--Sobic001G230100 Sobic008G088830--Sobic006G281500 Sobic004G132300 Sobic004G132300 Sobic008G088830--Sobic004G132300 Sobic010G002400 Sobic010G002400 Sobic008G088830--Sobic010G002400 Sobic003G400100 Sobic003G400100 Sobic008G088830--Sobic003G400100 Sobic003G273600 Sobic003G273600 Sobic008G088830--Sobic003G273600 Sobic001G338400 Sobic001G338400 Sobic008G088830--Sobic001G338400 Sobic004G082900 Sobic004G082900 Sobic008G088830--Sobic004G082900 Sobic006G280600 Sobic006G280600 Sobic008G088830--Sobic006G280600 Sobic004G291400 Sobic004G291400 Sobic004G124100--Sobic004G291400 Sobic001G468600 Sobic001G468600 Sobic004G124100--Sobic001G468600 Sobic006G002201 Sobic006G002201 Sobic004G124100--Sobic006G002201 Sobic004G248900 Sobic004G248900 Sobic004G124100--Sobic004G248900 Sobic006G010400 Sobic006G010400 Sobic004G124100--Sobic006G010400 Sobic006G157000 Sobic006G157000 Sobic004G124100--Sobic006G157000 Sobic008G118600 Sobic008G118600 Sobic004G124100--Sobic008G118600 Sobic004G124100--Sobic005G105500 Sobic008G103800 Sobic008G103800 Sobic004G124100--Sobic008G103800 Sobic001G048200--Sobic006G244700 Sobic003G055700 Sobic003G055700 Sobic001G048200--Sobic003G055700 Sobic002G116900 Sobic002G116900 Sobic001G048200--Sobic002G116900 Sobic010G049100 Sobic010G049100 Sobic001G048200--Sobic010G049100 Sobic008G032600 Sobic008G032600 Sobic001G048200--Sobic008G032600 Sobic004G080100 Sobic004G080100 Sobic001G048200--Sobic004G080100 Sobic004G040900 Sobic004G040900 Sobic001G048200--Sobic004G040900 Sobic001G048200--Sobic007G188300 Sobic001G048200--Sobic001G468600 Sobic004G314500 Sobic004G314500 Sobic001G067300--Sobic004G314500 Sobic001G096300 Sobic001G096300 Sobic001G067300--Sobic001G096300 Sobic009G124000 Sobic009G124000 Sobic001G067300--Sobic009G124000 Sobic004G265900 Sobic004G265900 Sobic001G067300--Sobic004G265900 Sobic001G380500 Sobic001G380500 Sobic001G067300--Sobic001G380500 Sobic006G238700 Sobic006G238700 Sobic001G067300--Sobic006G238700 Sobic001G486700 Sobic001G486700 Sobic001G067300--Sobic001G486700 Sobic001G067300--Sobic006G244700 Sobic001G067300--Sobic002G116900
Octagon: transcription factors


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