Gene annotation
Transcriptome id Sobic.001G048200.2
Synonym Sb01g004430
Functional annotation elongation factor P, putative, expressed
UniProt A0A1B6QHC1
Pfam PF08207 PF01132 PF09285
Panther DB PTHR30053 PTHR30053:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006414; translational elongation GO:0003746translation elongation factor activity GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT4G26310 : elongation factor P (EF-P) family protein
RAP-DB (Rice) LOC_Os03g59160.1 : elongation factor P, putative, expressed
MaizeGDB (Corn) Zm00025a008646
Brachypodium KQK12597
Barley HORVU5Hr1G109480.14 , HORVU5Hr1G109480.13 , HORVU5Hr1G109480.12 , HORVU5Hr1G109480.11 , HORVU5Hr1G109480.10 , HORVU5Hr1G109480.9 , HORVU5Hr1G109480.8 , HORVU5Hr1G109480.7 , HORVU5Hr1G109480.6 , HORVU5Hr1G109480.5 , HORVU5Hr1G109480.4 , HORVU5Hr1G109480.3 , HORVU5Hr1G109480.2 , HORVU5Hr1G109480.1
Wheat TraesCS5D02G466900 , TraesCS5B02G465100 , TraesCS5A02G456100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
2 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
3 Sobic.002G116900 expressed protein -
4 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
5 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
6 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
7 Sobic.004G040900 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
8 Sobic.007G188300 integral membrane family protein, putative, expressed -
9 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
10 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
11 Sobic.001G067300 histidinol dehydrogenase, chloroplast precursor, putative, expressed K00013: histidinol dehydrogenase
12 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
13 Sobic.002G111200 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
14 Sobic.007G117500 stromal cell-derived factor 2-like protein precursor, putative, expressed -
15 Sobic.010G051300 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
17 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
18 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
19 Sobic.004G121300 ATP11 protein, expressed K07555: ATPeAF1, ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
20 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G048200 Sobic001G048200 Sobic006G244700 Sobic006G244700 Sobic001G048200--Sobic006G244700 Sobic003G055700 Sobic003G055700 Sobic001G048200--Sobic003G055700 Sobic002G116900 Sobic002G116900 Sobic001G048200--Sobic002G116900 Sobic010G049100 Sobic010G049100 Sobic001G048200--Sobic010G049100 Sobic008G032600 Sobic008G032600 Sobic001G048200--Sobic008G032600 Sobic004G080100 Sobic004G080100 Sobic001G048200--Sobic004G080100 Sobic004G040900 Sobic004G040900 Sobic001G048200--Sobic004G040900 Sobic007G188300 Sobic007G188300 Sobic001G048200--Sobic007G188300 Sobic001G468600 Sobic001G468600 Sobic001G048200--Sobic001G468600 Sobic001G263000 Sobic001G263000 Sobic006G244700--Sobic001G263000 Sobic006G244700--Sobic001G048200 Sobic005G044800 Sobic005G044800 Sobic006G244700--Sobic005G044800 Sobic006G244700--Sobic007G188300 Sobic004G130900 Sobic004G130900 Sobic006G244700--Sobic004G130900 Sobic009G004600 Sobic009G004600 Sobic006G244700--Sobic009G004600 Sobic003G261400 Sobic003G261400 Sobic006G244700--Sobic003G261400 Sobic002G209400 Sobic002G209400 Sobic006G244700--Sobic002G209400 Sobic004G081800 Sobic004G081800 Sobic006G244700--Sobic004G081800 Sobic007G136100 Sobic007G136100 Sobic003G055700--Sobic007G136100 Sobic003G055700--Sobic005G044800 Sobic001G219300 Sobic001G219300 Sobic003G055700--Sobic001G219300 Sobic003G055700--Sobic001G048200 Sobic003G055700--Sobic006G244700 Sobic003G055700--Sobic008G032600 Sobic009G139900 Sobic009G139900 Sobic003G055700--Sobic009G139900 Sobic003G372000 Sobic003G372000 Sobic003G055700--Sobic003G372000 Sobic003G055700--Sobic004G080100 Sobic001G047400 Sobic001G047400 Sobic002G116900--Sobic001G047400 Sobic004G296400 Sobic004G296400 Sobic002G116900--Sobic004G296400 Sobic010G251000 Sobic010G251000 Sobic002G116900--Sobic010G251000 Sobic005G168600 Sobic005G168600 Sobic002G116900--Sobic005G168600 Sobic009G165800 Sobic009G165800 Sobic002G116900--Sobic009G165800 Sobic004G183600 Sobic004G183600 Sobic002G116900--Sobic004G183600 Sobic010G051300 Sobic010G051300 Sobic002G116900--Sobic010G051300 Sobic001G270400 Sobic001G270400 Sobic002G116900--Sobic001G270400 Sobic002G116900--Sobic006G244700 Sobic010G049100--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic010G049100--Sobic003G246700 Sobic001G014800 Sobic001G014800 Sobic010G049100--Sobic001G014800 Sobic010G049100--Sobic008G032600 Sobic004G121300 Sobic004G121300 Sobic010G049100--Sobic004G121300 Sobic002G226900 Sobic002G226900 Sobic010G049100--Sobic002G226900 Sobic010G049100--Sobic004G296400 Sobic010G049100--Sobic009G139900 Sobic004G136300 Sobic004G136300 Sobic010G049100--Sobic004G136300 Sobic008G032600--Sobic010G049100 Sobic008G156700 Sobic008G156700 Sobic008G032600--Sobic008G156700 Sobic008G032600--Sobic004G080100 Sobic009G133600 Sobic009G133600 Sobic008G032600--Sobic009G133600 Sobic008G032600--Sobic005G168600 Sobic003G110400 Sobic003G110400 Sobic008G032600--Sobic003G110400 Sobic008G032600--Sobic003G055700 Sobic008G032600--Sobic006G244700 Sobic008G033500 Sobic008G033500 Sobic008G032600--Sobic008G033500 Sobic004G080100--Sobic010G049100 Sobic004G067100 Sobic004G067100 Sobic004G080100--Sobic004G067100 Sobic004G080100--Sobic003G246700 Sobic004G080100--Sobic002G226900 Sobic004G080100--Sobic001G219300 Sobic004G080100--Sobic008G032600 Sobic003G139800 Sobic003G139800 Sobic004G080100--Sobic003G139800 Sobic008G179900 Sobic008G179900 Sobic004G080100--Sobic008G179900 Sobic008G089900 Sobic008G089900 Sobic004G080100--Sobic008G089900 Sobic002G359400 Sobic002G359400 Sobic004G040900--Sobic002G359400 Sobic002G294800 Sobic002G294800 Sobic004G040900--Sobic002G294800 Sobic010G013200 Sobic010G013200 Sobic004G040900--Sobic010G013200 Sobic001G402500 Sobic001G402500 Sobic004G040900--Sobic001G402500 Sobic008G070800 Sobic008G070800 Sobic004G040900--Sobic008G070800 Sobic001G120500 Sobic001G120500 Sobic004G040900--Sobic001G120500 Sobic008G183700 Sobic008G183700 Sobic004G040900--Sobic008G183700 Sobic004G040900--Sobic004G296400 Sobic003G355900 Sobic003G355900 Sobic004G040900--Sobic003G355900 Sobic009G149500 Sobic009G149500 Sobic007G188300--Sobic009G149500 Sobic001G085100 Sobic001G085100 Sobic007G188300--Sobic001G085100 Sobic010G205300 Sobic010G205300 Sobic007G188300--Sobic010G205300 Sobic007G188300--Sobic006G244700 Sobic007G188300--Sobic001G263000 Sobic007G188300--Sobic001G014800 Sobic007G014900 Sobic007G014900 Sobic007G188300--Sobic007G014900 Sobic004G356900 Sobic004G356900 Sobic007G188300--Sobic004G356900 Sobic007G188300--Sobic002G209400 Sobic001G434200 Sobic001G434200 Sobic001G468600--Sobic001G434200 Sobic006G002201 Sobic006G002201 Sobic001G468600--Sobic006G002201 Sobic004G216400 Sobic004G216400 Sobic001G468600--Sobic004G216400 Sobic002G332900 Sobic002G332900 Sobic001G468600--Sobic002G332900 Sobic004G124100 Sobic004G124100 Sobic001G468600--Sobic004G124100 Sobic010G262433 Sobic010G262433 Sobic001G468600--Sobic010G262433 Sobic009G072000 Sobic009G072000 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic006G157000 Sobic006G157000 Sobic001G468600--Sobic006G157000
Octagon: transcription factors


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