Gene annotation
Transcriptome id Sobic.001G468600.1
Synonym Sb01g043930
Functional annotation seryl-tRNA synthetase, putative, expressed
UniProt C5WTV8
Pfam PF02403 PF00587
Panther DB PTHR11778 PTHR11778:SF7
NCBI CDD -
KEGG Orthology K01875; SARS, seryl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0006434seryl-tRNA aminoacylation GO:0005737cytoplasm GO:0004828serine-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT5G27470 : seryl-tRNA synthetase / serine--tRNA ligase
RAP-DB (Rice) LOC_Os01g37837.1 : seryl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a057312 , Zm00025a015671 , Zm00025a051832 , Zm00025a036703 , Zm00025a053166
Brachypodium -
Barley HORVU6Hr1G080800.4 , HORVU6Hr1G080800.5 , HORVU6Hr1G080800.6 , HORVU6Hr1G080800.7 , HORVU6Hr1G080800.1 , HORVU6Hr1G080800.2 , HORVU6Hr1G080800.3
Wheat TraesCS6B02G365000 , TraesCS6B02G365000 , TraesCS6A02G334300
Populus -


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cDNA sequences
Sobic.001G468600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
2 Sobic.006G002201 - -
3 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
4 Sobic.002G332900 RNA recognition motif containing protein, putative, expressed -
5 Sobic.004G124100 EMB1303, putative, expressed -
6 Sobic.010G262433 - -
7 Sobic.009G072000 phosphoribosylformylglycinamidine synthase, putative, expressed K01933: phosphoribosylformylglycinamidine cyclo-ligase
8 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
9 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
10 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
11 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
12 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
13 Sobic.004G291400 rho guanine nucleotide exchange factor, putative, expressed -
14 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
15 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
16 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
17 Sobic.007G188300 integral membrane family protein, putative, expressed -
18 Sobic.001G486700 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
19 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
20 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10


Gene co-expression network
sample Sobic001G468600 Sobic001G468600 Sobic001G434200 Sobic001G434200 Sobic001G468600--Sobic001G434200 Sobic006G002201 Sobic006G002201 Sobic001G468600--Sobic006G002201 Sobic004G216400 Sobic004G216400 Sobic001G468600--Sobic004G216400 Sobic002G332900 Sobic002G332900 Sobic001G468600--Sobic002G332900 Sobic004G124100 Sobic004G124100 Sobic001G468600--Sobic004G124100 Sobic010G262433 Sobic010G262433 Sobic001G468600--Sobic010G262433 Sobic009G072000 Sobic009G072000 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic006G157000 Sobic006G157000 Sobic001G468600--Sobic006G157000 Sobic007G071900 Sobic007G071900 Sobic001G434200--Sobic007G071900 Sobic006G093300 Sobic006G093300 Sobic001G434200--Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic001G434200--Sobic006G039400 Sobic001G434200--Sobic001G468600 Sobic001G333100 Sobic001G333100 Sobic001G434200--Sobic001G333100 Sobic004G171200 Sobic004G171200 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G014800 Sobic001G014800 Sobic001G434200--Sobic001G014800 Sobic003G103400 Sobic003G103400 Sobic006G002201--Sobic003G103400 Sobic007G061400 Sobic007G061400 Sobic006G002201--Sobic007G061400 Sobic005G105500 Sobic005G105500 Sobic006G002201--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G002201--Sobic004G291400 Sobic005G111900 Sobic005G111900 Sobic006G002201--Sobic005G111900 Sobic003G196800 Sobic003G196800 Sobic006G002201--Sobic003G196800 Sobic006G002201--Sobic001G468600 Sobic001G458700 Sobic001G458700 Sobic006G002201--Sobic001G458700 Sobic006G002201--Sobic004G124100 Sobic004G216400--Sobic010G262433 Sobic004G216400--Sobic001G468600 Sobic002G341800 Sobic002G341800 Sobic004G216400--Sobic002G341800 Sobic001G283200 Sobic001G283200 Sobic004G216400--Sobic001G283200 Sobic004G310500 Sobic004G310500 Sobic004G216400--Sobic004G310500 Sobic001G021300 Sobic001G021300 Sobic004G216400--Sobic001G021300 Sobic009G190300 Sobic009G190300 Sobic004G216400--Sobic009G190300 Sobic002G071000 Sobic002G071000 Sobic004G216400--Sobic002G071000 Sobic001G082100 Sobic001G082100 Sobic004G216400--Sobic001G082100 Sobic002G332900--Sobic001G468600 Sobic004G250500 Sobic004G250500 Sobic002G332900--Sobic004G250500 Sobic002G332900--Sobic004G216400 Sobic003G239800 Sobic003G239800 Sobic002G332900--Sobic003G239800 Sobic002G332900--Sobic004G310500 Sobic002G419100 Sobic002G419100 Sobic002G332900--Sobic002G419100 Sobic004G194900 Sobic004G194900 Sobic002G332900--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic002G332900--Sobic002G394600 Sobic002G332900--Sobic010G262433 Sobic004G124100--Sobic004G291400 Sobic004G124100--Sobic001G468600 Sobic004G124100--Sobic006G002201 Sobic004G248900 Sobic004G248900 Sobic004G124100--Sobic004G248900 Sobic006G010400 Sobic006G010400 Sobic004G124100--Sobic006G010400 Sobic004G124100--Sobic006G157000 Sobic008G118600 Sobic008G118600 Sobic004G124100--Sobic008G118600 Sobic004G124100--Sobic005G105500 Sobic008G103800 Sobic008G103800 Sobic004G124100--Sobic008G103800 Sobic010G262433--Sobic004G216400 Sobic010G262433--Sobic001G468600 Sobic010G262433--Sobic002G071000 Sobic001G021400 Sobic001G021400 Sobic010G262433--Sobic001G021400 Sobic009G257600 Sobic009G257600 Sobic010G262433--Sobic009G257600 Sobic010G262433--Sobic006G002201 Sobic010G262433--Sobic004G310500 Sobic010G262433--Sobic002G332900 Sobic001G219300 Sobic001G219300 Sobic010G262433--Sobic001G219300 Sobic009G072000--Sobic006G157000 Sobic009G072000--Sobic001G468600 Sobic003G216500 Sobic003G216500 Sobic009G072000--Sobic003G216500 Sobic001G486700 Sobic001G486700 Sobic009G072000--Sobic001G486700 Sobic009G072000--Sobic006G002201 Sobic004G275600 Sobic004G275600 Sobic009G072000--Sobic004G275600 Sobic009G072000--Sobic005G105500 Sobic003G309300 Sobic003G309300 Sobic009G072000--Sobic003G309300 Sobic006G213400 Sobic006G213400 Sobic009G072000--Sobic006G213400 Sobic002G408900 Sobic002G408900 Sobic009G249800--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic009G249800--Sobic004G208500 Sobic001G251600 Sobic001G251600 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic001G460500 Sobic001G460500 Sobic009G249800--Sobic001G460500 Sobic004G256000 Sobic004G256000 Sobic009G249800--Sobic004G256000 Sobic006G157000--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic006G157000--Sobic009G071700 Sobic006G157000--Sobic009G072000 Sobic010G216300 Sobic010G216300 Sobic006G157000--Sobic010G216300 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G157000--Sobic006G010400 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000
Octagon: transcription factors


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