Gene annotation
Transcriptome id Sobic.002G332900.1
Synonym Sb02g035890
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XAW4
Pfam PF00076
Panther DB PTHR15241 PTHR15241:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G54580 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g36490.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a014870
Brachypodium KQK15838
Barley HORVU2Hr1G042560.7 , HORVU2Hr1G042560.2
Wheat TraesCS2D02G217900 , TraesCS2B02G237100 , TraesCS2A02G212000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
2 Sobic.004G250500 expressed protein -
3 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
4 Sobic.003G239800 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
5 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
6 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
7 Sobic.004G194900 expressed protein -
8 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
9 Sobic.010G262433 - -
10 Sobic.002G393500 expressed protein -
11 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
12 Sobic.010G024100 tRNA 2-phosphotransferase 1, putative, expressed K10669: TRPT1, 2'-phosphotransferase
13 Sobic.007G188300 integral membrane family protein, putative, expressed -
14 Sobic.006G002201 - -
15 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
16 Sobic.002G178601 - -
17 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
18 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
19 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
20 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase


Gene co-expression network
sample Sobic002G332900 Sobic002G332900 Sobic001G468600 Sobic001G468600 Sobic002G332900--Sobic001G468600 Sobic004G250500 Sobic004G250500 Sobic002G332900--Sobic004G250500 Sobic004G216400 Sobic004G216400 Sobic002G332900--Sobic004G216400 Sobic003G239800 Sobic003G239800 Sobic002G332900--Sobic003G239800 Sobic004G310500 Sobic004G310500 Sobic002G332900--Sobic004G310500 Sobic002G419100 Sobic002G419100 Sobic002G332900--Sobic002G419100 Sobic004G194900 Sobic004G194900 Sobic002G332900--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic002G332900--Sobic002G394600 Sobic010G262433 Sobic010G262433 Sobic002G332900--Sobic010G262433 Sobic001G434200 Sobic001G434200 Sobic001G468600--Sobic001G434200 Sobic006G002201 Sobic006G002201 Sobic001G468600--Sobic006G002201 Sobic001G468600--Sobic004G216400 Sobic001G468600--Sobic002G332900 Sobic004G124100 Sobic004G124100 Sobic001G468600--Sobic004G124100 Sobic001G468600--Sobic010G262433 Sobic009G072000 Sobic009G072000 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic006G157000 Sobic006G157000 Sobic001G468600--Sobic006G157000 Sobic004G250500--Sobic002G332900 Sobic001G404100 Sobic001G404100 Sobic004G250500--Sobic001G404100 Sobic006G011000 Sobic006G011000 Sobic004G250500--Sobic006G011000 Sobic008G087900 Sobic008G087900 Sobic004G250500--Sobic008G087900 Sobic002G389900 Sobic002G389900 Sobic004G250500--Sobic002G389900 Sobic004G250500--Sobic001G468600 Sobic005G111900 Sobic005G111900 Sobic004G250500--Sobic005G111900 Sobic004G136500 Sobic004G136500 Sobic004G250500--Sobic004G136500 Sobic001G147100 Sobic001G147100 Sobic004G250500--Sobic001G147100 Sobic004G216400--Sobic010G262433 Sobic004G216400--Sobic001G468600 Sobic002G341800 Sobic002G341800 Sobic004G216400--Sobic002G341800 Sobic001G283200 Sobic001G283200 Sobic004G216400--Sobic001G283200 Sobic004G216400--Sobic004G310500 Sobic001G021300 Sobic001G021300 Sobic004G216400--Sobic001G021300 Sobic009G190300 Sobic009G190300 Sobic004G216400--Sobic009G190300 Sobic002G071000 Sobic002G071000 Sobic004G216400--Sobic002G071000 Sobic001G082100 Sobic001G082100 Sobic004G216400--Sobic001G082100 Sobic004G356900 Sobic004G356900 Sobic003G239800--Sobic004G356900 Sobic009G004600 Sobic009G004600 Sobic003G239800--Sobic009G004600 Sobic010G205300 Sobic010G205300 Sobic003G239800--Sobic010G205300 Sobic009G228800 Sobic009G228800 Sobic003G239800--Sobic009G228800 Sobic004G232800 Sobic004G232800 Sobic003G239800--Sobic004G232800 Sobic006G280600 Sobic006G280600 Sobic003G239800--Sobic006G280600 Sobic003G239800--Sobic002G341800 Sobic003G239800--Sobic004G310500 Sobic007G188300 Sobic007G188300 Sobic003G239800--Sobic007G188300 Sobic004G310500--Sobic004G194900 Sobic009G075800 Sobic009G075800 Sobic004G310500--Sobic009G075800 Sobic006G044600 Sobic006G044600 Sobic004G310500--Sobic006G044600 Sobic004G310500--Sobic001G283200 Sobic009G257600 Sobic009G257600 Sobic004G310500--Sobic009G257600 Sobic008G156700 Sobic008G156700 Sobic004G310500--Sobic008G156700 Sobic001G512300 Sobic001G512300 Sobic004G310500--Sobic001G512300 Sobic004G310500--Sobic002G394600 Sobic009G222500 Sobic009G222500 Sobic004G310500--Sobic009G222500 Sobic009G213500 Sobic009G213500 Sobic002G419100--Sobic009G213500 Sobic002G419100--Sobic010G205300 Sobic003G186700 Sobic003G186700 Sobic002G419100--Sobic003G186700 Sobic002G084500 Sobic002G084500 Sobic002G419100--Sobic002G084500 Sobic002G419100--Sobic002G341800 Sobic002G419100--Sobic004G310500 Sobic004G212200 Sobic004G212200 Sobic002G419100--Sobic004G212200 Sobic006G252200 Sobic006G252200 Sobic002G419100--Sobic006G252200 Sobic003G349300 Sobic003G349300 Sobic002G419100--Sobic003G349300 Sobic004G194900--Sobic010G205300 Sobic002G281300 Sobic002G281300 Sobic004G194900--Sobic002G281300 Sobic004G194900--Sobic006G044600 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G194900--Sobic004G310500 Sobic001G458700 Sobic001G458700 Sobic004G194900--Sobic001G458700 Sobic001G085100 Sobic001G085100 Sobic004G194900--Sobic001G085100 Sobic004G194900--Sobic005G111900 Sobic002G394600--Sobic002G341800 Sobic002G394600--Sobic006G044600 Sobic002G014400 Sobic002G014400 Sobic002G394600--Sobic002G014400 Sobic001G251600 Sobic001G251600 Sobic002G394600--Sobic001G251600 Sobic002G394600--Sobic009G190300 Sobic002G394600--Sobic004G194900 Sobic002G394600--Sobic001G404100 Sobic007G177300 Sobic007G177300 Sobic002G394600--Sobic007G177300 Sobic002G394600--Sobic004G310500 Sobic010G262433--Sobic004G216400 Sobic010G262433--Sobic001G468600 Sobic010G262433--Sobic002G071000 Sobic001G021400 Sobic001G021400 Sobic010G262433--Sobic001G021400 Sobic010G262433--Sobic009G257600 Sobic010G262433--Sobic006G002201 Sobic010G262433--Sobic004G310500 Sobic010G262433--Sobic002G332900 Sobic001G219300 Sobic001G219300 Sobic010G262433--Sobic001G219300
Octagon: transcription factors


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