Gene annotation
Transcriptome id Sobic.004G250500.1
Synonym Sb04g029010
Functional annotation expressed protein
UniProt C5XZD1
Pfam PF08698
Panther DB PTHR21686 PTHR21686:SF12
NCBI CDD KOG3100; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G30495 : Fcf2 pre-rRNA processing protein
RAP-DB (Rice) LOC_Os02g49780.1 : expressed protein
MaizeGDB (Corn) Zm00025a021911 , Zm00025a032640
Brachypodium KQK01612
Barley -
Wheat TraesCS6D02G272800 , TraesCS6B02G322000 , TraesCS6A02G291500
Populus -


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cDNA sequences
Sobic.004G250500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G332900 RNA recognition motif containing protein, putative, expressed -
2 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
3 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
4 Sobic.008G087900 expressed protein -
5 Sobic.002G389900 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed -
6 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
7 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
8 Sobic.004G136500 - -
9 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
10 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
11 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
12 Sobic.009G124400 similar to Putative uncharacterized protein(PubMedID : 29862293)@LSM domain containing protein, expressed K12624: U6 snRNA-associated Sm-like protein LSm5
13 Sobic.004G194900 expressed protein -
14 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
15 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
16 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
17 Sobic.007G188300 integral membrane family protein, putative, expressed -
18 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
19 Sobic.010G205300 secreted salivary protein, putative, expressed -
20 Sobic.002G185900 zinc finger protein-related, putative, expressed -


Gene co-expression network
sample Sobic004G250500 Sobic004G250500 Sobic002G332900 Sobic002G332900 Sobic004G250500--Sobic002G332900 Sobic001G404100 Sobic001G404100 Sobic004G250500--Sobic001G404100 Sobic006G011000 Sobic006G011000 Sobic004G250500--Sobic006G011000 Sobic008G087900 Sobic008G087900 Sobic004G250500--Sobic008G087900 Sobic002G389900 Sobic002G389900 Sobic004G250500--Sobic002G389900 Sobic001G468600 Sobic001G468600 Sobic004G250500--Sobic001G468600 Sobic005G111900 Sobic005G111900 Sobic004G250500--Sobic005G111900 Sobic004G136500 Sobic004G136500 Sobic004G250500--Sobic004G136500 Sobic001G147100 Sobic001G147100 Sobic004G250500--Sobic001G147100 Sobic002G332900--Sobic001G468600 Sobic002G332900--Sobic004G250500 Sobic004G216400 Sobic004G216400 Sobic002G332900--Sobic004G216400 Sobic003G239800 Sobic003G239800 Sobic002G332900--Sobic003G239800 Sobic004G310500 Sobic004G310500 Sobic002G332900--Sobic004G310500 Sobic002G419100 Sobic002G419100 Sobic002G332900--Sobic002G419100 Sobic004G194900 Sobic004G194900 Sobic002G332900--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic002G332900--Sobic002G394600 Sobic010G262433 Sobic010G262433 Sobic002G332900--Sobic010G262433 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic006G094600 Sobic006G094600 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic002G204000 Sobic002G204000 Sobic006G011000--Sobic002G204000 Sobic006G011000--Sobic008G137600 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic001G532100 Sobic001G532100 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic003G402600 Sobic003G402600 Sobic006G011000--Sobic003G402600 Sobic006G160100 Sobic006G160100 Sobic008G087900--Sobic006G160100 Sobic001G434200 Sobic001G434200 Sobic008G087900--Sobic001G434200 Sobic008G087900--Sobic005G111900 Sobic007G028500 Sobic007G028500 Sobic008G087900--Sobic007G028500 Sobic002G181600 Sobic002G181600 Sobic008G087900--Sobic002G181600 Sobic002G047500 Sobic002G047500 Sobic008G087900--Sobic002G047500 Sobic006G274800 Sobic006G274800 Sobic008G087900--Sobic006G274800 Sobic006G039400 Sobic006G039400 Sobic008G087900--Sobic006G039400 Sobic001G412100 Sobic001G412100 Sobic008G087900--Sobic001G412100 Sobic008G116000 Sobic008G116000 Sobic002G389900--Sobic008G116000 Sobic002G311100 Sobic002G311100 Sobic002G389900--Sobic002G311100 Sobic006G196300 Sobic006G196300 Sobic002G389900--Sobic006G196300 Sobic004G252900 Sobic004G252900 Sobic002G389900--Sobic004G252900 Sobic003G293300 Sobic003G293300 Sobic002G389900--Sobic003G293300 Sobic002G263600 Sobic002G263600 Sobic002G389900--Sobic002G263600 Sobic008G054000 Sobic008G054000 Sobic002G389900--Sobic008G054000 Sobic001G251100 Sobic001G251100 Sobic002G389900--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic002G389900--Sobic001G333100 Sobic001G468600--Sobic001G434200 Sobic006G002201 Sobic006G002201 Sobic001G468600--Sobic006G002201 Sobic001G468600--Sobic004G216400 Sobic001G468600--Sobic002G332900 Sobic004G124100 Sobic004G124100 Sobic001G468600--Sobic004G124100 Sobic001G468600--Sobic010G262433 Sobic009G072000 Sobic009G072000 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic006G157000 Sobic006G157000 Sobic001G468600--Sobic006G157000 Sobic007G061400 Sobic007G061400 Sobic005G111900--Sobic007G061400 Sobic001G014800 Sobic001G014800 Sobic005G111900--Sobic001G014800 Sobic006G029000 Sobic006G029000 Sobic005G111900--Sobic006G029000 Sobic005G111900--Sobic006G002201 Sobic005G111900--Sobic004G194900 Sobic003G349300 Sobic003G349300 Sobic005G111900--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic009G149500 Sobic009G149500 Sobic005G111900--Sobic009G149500 Sobic001G008800 Sobic001G008800 Sobic004G136500--Sobic001G008800 Sobic004G074300 Sobic004G074300 Sobic004G136500--Sobic004G074300 Sobic004G117800 Sobic004G117800 Sobic004G136500--Sobic004G117800 Sobic001G119900 Sobic001G119900 Sobic004G136500--Sobic001G119900 Sobic002G209400 Sobic002G209400 Sobic004G136500--Sobic002G209400 Sobic006G272200 Sobic006G272200 Sobic004G136500--Sobic006G272200 Sobic010G085200 Sobic010G085200 Sobic004G136500--Sobic010G085200 Sobic001G132900 Sobic001G132900 Sobic004G136500--Sobic001G132900 Sobic001G280400 Sobic001G280400 Sobic004G136500--Sobic001G280400 Sobic003G424800 Sobic003G424800 Sobic001G147100--Sobic003G424800 Sobic001G147100--Sobic001G404100 Sobic001G147100--Sobic006G011000 Sobic009G187300 Sobic009G187300 Sobic001G147100--Sobic009G187300 Sobic002G406600 Sobic002G406600 Sobic001G147100--Sobic002G406600 Sobic004G060600 Sobic004G060600 Sobic001G147100--Sobic004G060600 Sobic001G408100 Sobic001G408100 Sobic001G147100--Sobic001G408100 Sobic001G147100--Sobic009G104000 Sobic002G266800 Sobic002G266800 Sobic001G147100--Sobic002G266800
Octagon: transcription factors


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