Gene annotation
Transcriptome id Sobic.002G389900.1
Synonym Sb02g040565
Functional annotation ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
UniProt A0A1B6QFW4
Pfam PF01248
Panther DB PTHR21596
NCBI CDD KOG3387; 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01790 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os07g44230.1 : ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048912 , Zm00025a048911
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G116000 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
2 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
4 Sobic.004G252900 transcription factor IIA large subunit, putative, expressed K03122: TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
5 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
6 Sobic.002G263600 expressed protein -
7 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
8 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
9 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
10 Sobic.001G082000 zinc finger family protein, putative, expressed K06874: zinc finger protein
11 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
13 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
14 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
15 Sobic.003G218300 C-5 cytosine-specific DNA methylase, putative, expressed K15336: TRDMT1, tRNA (cytosine38-C5)-methyltransferase
16 Sobic.002G009200 - K15456: protein KTI12
17 Sobic.003G289500 selenium-binding protein, related, putative, expressed -
18 Sobic.009G016400 RNA recognition motif containing protein, expressed -
19 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
20 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10


Gene co-expression network
sample Sobic002G389900 Sobic002G389900 Sobic008G116000 Sobic008G116000 Sobic002G389900--Sobic008G116000 Sobic002G311100 Sobic002G311100 Sobic002G389900--Sobic002G311100 Sobic006G196300 Sobic006G196300 Sobic002G389900--Sobic006G196300 Sobic004G252900 Sobic004G252900 Sobic002G389900--Sobic004G252900 Sobic003G293300 Sobic003G293300 Sobic002G389900--Sobic003G293300 Sobic002G263600 Sobic002G263600 Sobic002G389900--Sobic002G263600 Sobic008G054000 Sobic008G054000 Sobic002G389900--Sobic008G054000 Sobic001G251100 Sobic001G251100 Sobic002G389900--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic002G389900--Sobic001G333100 Sobic008G116000--Sobic002G389900 Sobic001G082000 Sobic001G082000 Sobic008G116000--Sobic001G082000 Sobic004G018000 Sobic004G018000 Sobic008G116000--Sobic004G018000 Sobic002G279700 Sobic002G279700 Sobic008G116000--Sobic002G279700 Sobic004G121300 Sobic004G121300 Sobic008G116000--Sobic004G121300 Sobic003G218300 Sobic003G218300 Sobic008G116000--Sobic003G218300 Sobic003G186900 Sobic003G186900 Sobic008G116000--Sobic003G186900 Sobic008G116000--Sobic006G196300 Sobic008G116000--Sobic004G252900 Sobic010G147100 Sobic010G147100 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic010G074300 Sobic010G074300 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic006G196300--Sobic003G264100 Sobic002G405400 Sobic002G405400 Sobic006G196300--Sobic002G405400 Sobic001G455800 Sobic001G455800 Sobic006G196300--Sobic001G455800 Sobic002G142900 Sobic002G142900 Sobic006G196300--Sobic002G142900 Sobic010G020400 Sobic010G020400 Sobic006G196300--Sobic010G020400 Sobic006G196300--Sobic001G333100 Sobic001G227400 Sobic001G227400 Sobic006G196300--Sobic001G227400 Sobic004G241900 Sobic004G241900 Sobic006G196300--Sobic004G241900 Sobic002G303600 Sobic002G303600 Sobic006G196300--Sobic002G303600 Sobic004G252900--Sobic006G196300 Sobic002G185900 Sobic002G185900 Sobic004G252900--Sobic002G185900 Sobic004G252900--Sobic003G264100 Sobic002G117400 Sobic002G117400 Sobic004G252900--Sobic002G117400 Sobic003G379200 Sobic003G379200 Sobic004G252900--Sobic003G379200 Sobic010G275400 Sobic010G275400 Sobic004G252900--Sobic010G275400 Sobic006G039400 Sobic006G039400 Sobic004G252900--Sobic006G039400 Sobic004G028100 Sobic004G028100 Sobic004G252900--Sobic004G028100 Sobic001G019800 Sobic001G019800 Sobic004G252900--Sobic001G019800 Sobic003G293300--Sobic001G251100 Sobic006G010000 Sobic006G010000 Sobic003G293300--Sobic006G010000 Sobic002G020700 Sobic002G020700 Sobic003G293300--Sobic002G020700 Sobic003G293300--Sobic001G333100 Sobic003G293300--Sobic003G218300 Sobic002G071000 Sobic002G071000 Sobic003G293300--Sobic002G071000 Sobic001G234200 Sobic001G234200 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic002G263600--Sobic002G142900 Sobic002G263600--Sobic010G020400 Sobic002G263600--Sobic010G131900 Sobic009G075800 Sobic009G075800 Sobic002G263600--Sobic009G075800 Sobic003G046300 Sobic003G046300 Sobic002G263600--Sobic003G046300 Sobic009G222500 Sobic009G222500 Sobic002G263600--Sobic009G222500 Sobic001G014800 Sobic001G014800 Sobic002G263600--Sobic001G014800 Sobic002G263600--Sobic006G196300 Sobic002G008800 Sobic002G008800 Sobic002G263600--Sobic002G008800 Sobic004G244900 Sobic004G244900 Sobic008G054000--Sobic004G244900 Sobic004G356700 Sobic004G356700 Sobic008G054000--Sobic004G356700 Sobic004G334300 Sobic004G334300 Sobic008G054000--Sobic004G334300 Sobic002G257750 Sobic002G257750 Sobic008G054000--Sobic002G257750 Sobic008G044100 Sobic008G044100 Sobic008G054000--Sobic008G044100 Sobic003G398700 Sobic003G398700 Sobic008G054000--Sobic003G398700 Sobic003G101700 Sobic003G101700 Sobic008G054000--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic008G054000--Sobic002G316600 Sobic002G344000 Sobic002G344000 Sobic008G054000--Sobic002G344000 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic001G251100--Sobic003G379200 Sobic001G333100--Sobic003G264100 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic001G333100--Sobic010G020400 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500
Octagon: transcription factors


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