Gene annotation
Transcriptome id Sobic.001G082000.1
Synonym Sb01g007380
Functional annotation zinc finger family protein, putative, expressed
UniProt C5X055
Pfam PF03367
Panther DB PTHR10876 PTHR10876:SF0
NCBI CDD -
KEGG Orthology K06874; zinc finger protein
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G22480 : ZPR1 zinc-finger domain protein
RAP-DB (Rice) LOC_Os08g36774.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a008251 , Zm00025a023927 , Zm00025a037938 , Zm00025a032797
Brachypodium KQJ98646
Barley HORVU3Hr1G057840.24 , HORVU3Hr1G057840.25 , HORVU3Hr1G057840.26 , HORVU3Hr1G057840.27 , HORVU3Hr1G057840.20 , HORVU3Hr1G057840.21 , HORVU3Hr1G057840.22 , HORVU3Hr1G057840.23 , HORVU3Hr1G057840.28 , HORVU3Hr1G057840.29 , HORVU3Hr1G057840.5 , HORVU3Hr1G057840.19 , HORVU3Hr1G057840.11 , HORVU3Hr1G057840.10 , HORVU3Hr1G057840.13 , HORVU3Hr1G057840.15 , HORVU3Hr1G057840.17 , HORVU3Hr1G057840.16 , HORVU3Hr1G057840.60 , HORVU3Hr1G057840.61 , HORVU3Hr1G057840.63 , HORVU3Hr1G057840.64 , HORVU3Hr1G057840.66 , HORVU3Hr1G057840.67 , HORVU3Hr1G057840.8 , HORVU3Hr1G057840.6 , HORVU3Hr1G057840.59 , HORVU3Hr1G057840.58 , HORVU3Hr1G057840.55 , HORVU3Hr1G057840.56 , HORVU3Hr1G057840.51 , HORVU3Hr1G057840.50 , HORVU3Hr1G057840.53 , HORVU3Hr1G057840.52 , HORVU3Hr1G057840.42 , HORVU3Hr1G057840.41 , HORVU3Hr1G057840.44 , HORVU3Hr1G057840.45 , HORVU3Hr1G057840.48 , HORVU3Hr1G057840.49 , HORVU3Hr1G057840.43 , HORVU3Hr1G057840.4 , HORVU3Hr1G057840.46 , HORVU3Hr1G057840.7 , HORVU3Hr1G057840.36 , HORVU3Hr1G057840.35 , HORVU3Hr1G057840.34 , HORVU3Hr1G057840.33 , HORVU3Hr1G057840.32 , HORVU3Hr1G057840.30 , HORVU3Hr1G057840.1
Wheat TraesCS3D02G221100 , TraesCS2D02G578900 , TraesCS3B02G261400 , TraesCS2A02G568200 , TraesCS2B02G628600 , TraesCS2B02G628600 , TraesCS3A02G232100
Populus PNT40065


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cDNA sequences
Sobic.001G082000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G116000 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
2 Sobic.002G389900 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed -
3 Sobic.004G115350 - K12843: PRPF3, U4/U6 small nuclear ribonucleoprotein PRP3
4 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -
5 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
7 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
8 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
9 Sobic.001G019800 FAD binding domain containing protein, expressed K06126: ubiquinone biosynthesis monooxygenase Coq6
10 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
11 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
12 Sobic.004G307600 ATP-binding domain-containing protein, putative, expressed K14168: CTU1, cytoplasmic tRNA 2-thiolation protein 1
13 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
14 Sobic.002G358400 eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
15 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
16 Sobic.001G406100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15100: SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
17 Sobic.004G070700 GA16396-PA, putative, expressed -
18 Sobic.004G121300 ATP11 protein, expressed K07555: ATPeAF1, ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
19 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
20 Sobic.003G302900 transcriptional regulator family protein, putative, expressed -


Gene co-expression network
sample Sobic001G082000 Sobic001G082000 Sobic008G116000 Sobic008G116000 Sobic001G082000--Sobic008G116000 Sobic002G389900 Sobic002G389900 Sobic001G082000--Sobic002G389900 Sobic004G115350 Sobic004G115350 Sobic001G082000--Sobic004G115350 Sobic003G099100 Sobic003G099100 Sobic001G082000--Sobic003G099100 Sobic002G311100 Sobic002G311100 Sobic001G082000--Sobic002G311100 Sobic004G310500 Sobic004G310500 Sobic001G082000--Sobic004G310500 Sobic008G089900 Sobic008G089900 Sobic001G082000--Sobic008G089900 Sobic002G166900 Sobic002G166900 Sobic001G082000--Sobic002G166900 Sobic001G019800 Sobic001G019800 Sobic001G082000--Sobic001G019800 Sobic008G116000--Sobic002G389900 Sobic008G116000--Sobic001G082000 Sobic004G018000 Sobic004G018000 Sobic008G116000--Sobic004G018000 Sobic002G279700 Sobic002G279700 Sobic008G116000--Sobic002G279700 Sobic004G121300 Sobic004G121300 Sobic008G116000--Sobic004G121300 Sobic003G218300 Sobic003G218300 Sobic008G116000--Sobic003G218300 Sobic003G186900 Sobic003G186900 Sobic008G116000--Sobic003G186900 Sobic006G196300 Sobic006G196300 Sobic008G116000--Sobic006G196300 Sobic004G252900 Sobic004G252900 Sobic008G116000--Sobic004G252900 Sobic002G389900--Sobic008G116000 Sobic002G389900--Sobic002G311100 Sobic002G389900--Sobic006G196300 Sobic002G389900--Sobic004G252900 Sobic003G293300 Sobic003G293300 Sobic002G389900--Sobic003G293300 Sobic002G263600 Sobic002G263600 Sobic002G389900--Sobic002G263600 Sobic008G054000 Sobic008G054000 Sobic002G389900--Sobic008G054000 Sobic001G251100 Sobic001G251100 Sobic002G389900--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic002G389900--Sobic001G333100 Sobic004G356900 Sobic004G356900 Sobic004G115350--Sobic004G356900 Sobic006G049700 Sobic006G049700 Sobic004G115350--Sobic006G049700 Sobic009G222500 Sobic009G222500 Sobic004G115350--Sobic009G222500 Sobic004G202500 Sobic004G202500 Sobic004G115350--Sobic004G202500 Sobic006G101700 Sobic006G101700 Sobic004G115350--Sobic006G101700 Sobic004G115350--Sobic003G099100 Sobic003G349300 Sobic003G349300 Sobic004G115350--Sobic003G349300 Sobic008G153500 Sobic008G153500 Sobic004G115350--Sobic008G153500 Sobic010G209000 Sobic010G209000 Sobic004G115350--Sobic010G209000 Sobic009G123600 Sobic009G123600 Sobic003G099100--Sobic009G123600 Sobic002G385900 Sobic002G385900 Sobic003G099100--Sobic002G385900 Sobic003G099100--Sobic004G202500 Sobic003G099100--Sobic009G222500 Sobic010G027600 Sobic010G027600 Sobic003G099100--Sobic010G027600 Sobic009G135600 Sobic009G135600 Sobic003G099100--Sobic009G135600 Sobic003G099100--Sobic006G049700 Sobic010G278200 Sobic010G278200 Sobic003G099100--Sobic010G278200 Sobic003G099100--Sobic004G115350 Sobic010G147100 Sobic010G147100 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic010G074300 Sobic010G074300 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic004G194900 Sobic004G194900 Sobic004G310500--Sobic004G194900 Sobic009G075800 Sobic009G075800 Sobic004G310500--Sobic009G075800 Sobic006G044600 Sobic006G044600 Sobic004G310500--Sobic006G044600 Sobic001G283200 Sobic001G283200 Sobic004G310500--Sobic001G283200 Sobic009G257600 Sobic009G257600 Sobic004G310500--Sobic009G257600 Sobic008G156700 Sobic008G156700 Sobic004G310500--Sobic008G156700 Sobic001G512300 Sobic001G512300 Sobic004G310500--Sobic001G512300 Sobic002G394600 Sobic002G394600 Sobic004G310500--Sobic002G394600 Sobic004G310500--Sobic009G222500 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic009G162600 Sobic009G162600 Sobic008G089900--Sobic009G162600 Sobic004G103000 Sobic004G103000 Sobic008G089900--Sobic004G103000 Sobic002G204200 Sobic002G204200 Sobic008G089900--Sobic002G204200 Sobic002G001000 Sobic002G001000 Sobic008G089900--Sobic002G001000 Sobic001G414500 Sobic001G414500 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic009G187400 Sobic009G187400 Sobic008G089900--Sobic009G187400 Sobic009G207300 Sobic009G207300 Sobic008G089900--Sobic009G207300 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic004G067100 Sobic004G067100 Sobic002G166900--Sobic004G067100 Sobic002G166900--Sobic001G283200 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic004G321900 Sobic004G321900 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic007G093800 Sobic007G093800 Sobic001G019800--Sobic007G093800 Sobic002G117400 Sobic002G117400 Sobic001G019800--Sobic002G117400 Sobic003G193500 Sobic003G193500 Sobic001G019800--Sobic003G193500 Sobic001G019800--Sobic004G252900 Sobic001G019800--Sobic003G264100 Sobic004G092500 Sobic004G092500 Sobic001G019800--Sobic004G092500 Sobic010G092300 Sobic010G092300 Sobic001G019800--Sobic010G092300 Sobic005G160400 Sobic005G160400 Sobic001G019800--Sobic005G160400 Sobic010G265300 Sobic010G265300 Sobic001G019800--Sobic010G265300
Octagon: transcription factors


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