Gene annotation
Transcriptome id Sobic.002G358400.1
Synonym Sb02g037930, ERF1-3
Functional annotation eukaryotic peptide chain release factor subunit 1-1, putative, expressed
UniProt C5XD37
Pfam PF03463 PF03465 PF03464
Panther DB PTHR10113 PTHR10113:SF13
NCBI CDD -
KEGG Orthology K03265; ETF1, peptide chain release factor subunit 1
Gene Ontology GO:0016149; translation release factor activity, codon specific GO:0006415translational termination GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G26618 : eukaryotic release factor 1-3
RAP-DB (Rice) LOC_Os07g39870.3 : eukaryotic peptide chain release factor subunit 1-1, putative, expressed
MaizeGDB (Corn) Zm00025a051145 , Zm00025a017049 , Zm00025a015056 , Zm00025a043300
Brachypodium KQK13551 , KQK13547
Barley HORVU2Hr1G035400.2 , HORVU2Hr1G035400.1 , HORVU3Hr1G104360.4 , HORVU3Hr1G104360.3 , HORVU3Hr1G104360.2 , HORVU3Hr1G104360.1 , HORVU4Hr1G006500.1 , HORVU4Hr1G006500.2 , HORVU4Hr1G006500.4
Wheat -
Populus PNT53154 , PNT53155 , PNT53153


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cDNA sequences
Sobic.002G358400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
2 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
3 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
4 Sobic.001G019800 FAD binding domain containing protein, expressed K06126: ubiquinone biosynthesis monooxygenase Coq6
5 Sobic.003G373500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
6 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
7 Sobic.001G406100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15100: SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
8 Sobic.003G354600 csAtPR5, putative, expressed -
9 Sobic.004G070700 GA16396-PA, putative, expressed -
10 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
11 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
12 Sobic.003G302200 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
13 Sobic.003G316700 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
14 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
15 Sobic.002G358800 interferon-related developmental regulator, putative, expressed -
16 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
17 Sobic.002G117400 expressed protein -
18 Sobic.006G187100 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
19 Sobic.005G033200 expressed protein -
20 Sobic.002G335000 UPF0041 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G358400 Sobic002G358400 Sobic002G047700 Sobic002G047700 Sobic002G358400--Sobic002G047700 Sobic001G031100 Sobic001G031100 Sobic002G358400--Sobic001G031100 Sobic009G192000 Sobic009G192000 Sobic002G358400--Sobic009G192000 Sobic001G019800 Sobic001G019800 Sobic002G358400--Sobic001G019800 Sobic003G373500 Sobic003G373500 Sobic002G358400--Sobic003G373500 Sobic003G264200 Sobic003G264200 Sobic002G358400--Sobic003G264200 Sobic001G406100 Sobic001G406100 Sobic002G358400--Sobic001G406100 Sobic003G354600 Sobic003G354600 Sobic002G358400--Sobic003G354600 Sobic004G070700 Sobic004G070700 Sobic002G358400--Sobic004G070700 Sobic006G180000 Sobic006G180000 Sobic002G047700--Sobic006G180000 Sobic010G020400 Sobic010G020400 Sobic002G047700--Sobic010G020400 Sobic001G007000 Sobic001G007000 Sobic002G047700--Sobic001G007000 Sobic002G047700--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic002G047700--Sobic007G167900 Sobic008G070800 Sobic008G070800 Sobic002G047700--Sobic008G070800 Sobic001G014800 Sobic001G014800 Sobic002G047700--Sobic001G014800 Sobic002G047700--Sobic003G264200 Sobic009G044800 Sobic009G044800 Sobic002G047700--Sobic009G044800 Sobic001G031100--Sobic009G192000 Sobic001G031100--Sobic003G264200 Sobic001G031100--Sobic001G007000 Sobic004G054100 Sobic004G054100 Sobic001G031100--Sobic004G054100 Sobic001G031100--Sobic002G047700 Sobic009G222500 Sobic009G222500 Sobic001G031100--Sobic009G222500 Sobic001G080700 Sobic001G080700 Sobic001G031100--Sobic001G080700 Sobic009G068500 Sobic009G068500 Sobic001G031100--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G031100--Sobic010G251000 Sobic009G192000--Sobic001G031100 Sobic009G192000--Sobic007G167900 Sobic009G192000--Sobic010G020400 Sobic003G349300 Sobic003G349300 Sobic009G192000--Sobic003G349300 Sobic009G192000--Sobic001G014800 Sobic003G338500 Sobic003G338500 Sobic009G192000--Sobic003G338500 Sobic009G192000--Sobic006G180000 Sobic010G205300 Sobic010G205300 Sobic009G192000--Sobic010G205300 Sobic003G374000 Sobic003G374000 Sobic009G192000--Sobic003G374000 Sobic007G093800 Sobic007G093800 Sobic001G019800--Sobic007G093800 Sobic002G117400 Sobic002G117400 Sobic001G019800--Sobic002G117400 Sobic003G193500 Sobic003G193500 Sobic001G019800--Sobic003G193500 Sobic004G252900 Sobic004G252900 Sobic001G019800--Sobic004G252900 Sobic003G264100 Sobic003G264100 Sobic001G019800--Sobic003G264100 Sobic004G092500 Sobic004G092500 Sobic001G019800--Sobic004G092500 Sobic010G092300 Sobic010G092300 Sobic001G019800--Sobic010G092300 Sobic005G160400 Sobic005G160400 Sobic001G019800--Sobic005G160400 Sobic010G265300 Sobic010G265300 Sobic001G019800--Sobic010G265300 Sobic003G373500--Sobic003G264100 Sobic003G107500 Sobic003G107500 Sobic003G373500--Sobic003G107500 Sobic002G335000 Sobic002G335000 Sobic003G373500--Sobic002G335000 Sobic001G333100 Sobic001G333100 Sobic003G373500--Sobic001G333100 Sobic003G373500--Sobic004G252900 Sobic003G311900 Sobic003G311900 Sobic003G373500--Sobic003G311900 Sobic010G239900 Sobic010G239900 Sobic003G373500--Sobic010G239900 Sobic002G311100 Sobic002G311100 Sobic003G373500--Sobic002G311100 Sobic010G226000 Sobic010G226000 Sobic003G373500--Sobic010G226000 Sobic003G264200--Sobic001G031100 Sobic003G264200--Sobic001G080700 Sobic007G166400 Sobic007G166400 Sobic003G264200--Sobic007G166400 Sobic003G264200--Sobic009G222500 Sobic006G049700 Sobic006G049700 Sobic003G264200--Sobic006G049700 Sobic006G101700 Sobic006G101700 Sobic003G264200--Sobic006G101700 Sobic003G264200--Sobic002G047700 Sobic009G165800 Sobic009G165800 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100 Sobic001G070000 Sobic001G070000 Sobic001G406100--Sobic001G070000 Sobic010G074300 Sobic010G074300 Sobic001G406100--Sobic010G074300 Sobic008G047400 Sobic008G047400 Sobic001G406100--Sobic008G047400 Sobic001G406100--Sobic002G358400 Sobic004G103000 Sobic004G103000 Sobic001G406100--Sobic004G103000 Sobic008G187100 Sobic008G187100 Sobic001G406100--Sobic008G187100 Sobic001G406100--Sobic004G070700 Sobic002G204200 Sobic002G204200 Sobic001G406100--Sobic002G204200 Sobic009G207300 Sobic009G207300 Sobic001G406100--Sobic009G207300 Sobic001G136800 Sobic001G136800 Sobic003G354600--Sobic001G136800 Sobic003G119600 Sobic003G119600 Sobic003G354600--Sobic003G119600 Sobic002G305000 Sobic002G305000 Sobic003G354600--Sobic002G305000 Sobic003G354600--Sobic004G054100 Sobic001G355800 Sobic001G355800 Sobic003G354600--Sobic001G355800 Sobic010G210500 Sobic010G210500 Sobic003G354600--Sobic010G210500 Sobic009G201300 Sobic009G201300 Sobic003G354600--Sobic009G201300 Sobic002G181600 Sobic002G181600 Sobic003G354600--Sobic002G181600 Sobic003G220800 Sobic003G220800 Sobic003G354600--Sobic003G220800 Sobic004G070700--Sobic003G354600 Sobic001G193300 Sobic001G193300 Sobic004G070700--Sobic001G193300 Sobic007G171400 Sobic007G171400 Sobic004G070700--Sobic007G171400 Sobic008G168300 Sobic008G168300 Sobic004G070700--Sobic008G168300 Sobic006G185100 Sobic006G185100 Sobic004G070700--Sobic006G185100 Sobic002G111200 Sobic002G111200 Sobic004G070700--Sobic002G111200 Sobic002G325300 Sobic002G325300 Sobic004G070700--Sobic002G325300 Sobic002G091600 Sobic002G091600 Sobic004G070700--Sobic002G091600 Sobic003G176000 Sobic003G176000 Sobic004G070700--Sobic003G176000
Octagon: transcription factors


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