Gene annotation
Transcriptome id Sobic.006G187100.1,Sobic.006G187100.2
Synonym Sb06g026100, UFD1
Functional annotation ubiquitin fusion degradation protein, putative, expressed
UniProt A0A1B6PMT4
Pfam PF03152
Panther DB PTHR12555 PTHR12555:SF16
NCBI CDD KOG1816; Ubiquitin fusion-degradation protein
KEGG Orthology K14016; ubiquitin fusion degradation protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT2G21270 : ubiquitin fusion degradation 1
RAP-DB (Rice) LOC_Os04g48770.2 : ubiquitin fusion degradation protein, putative, expressed
MaizeGDB (Corn) Zm00025a010123
Brachypodium KQJ84153 , KQJ84151 , KQJ84152
Barley HORVU2Hr1G094290.10 , HORVU2Hr1G094290.4 , HORVU2Hr1G094290.5 , HORVU2Hr1G094290.6 , HORVU2Hr1G094290.7 , HORVU2Hr1G094290.1 , HORVU2Hr1G094290.3 , HORVU2Hr1G094290.8 , HORVU2Hr1G094290.9
Wheat TraesCS2A02G397100 , TraesCS2A02G397100 , TraesCS2D02G394900 , TraesCS2B02G415400
Populus PNT21038 , PNT21039 , PNT21042 , PNT21041 , PNT21040


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cDNA sequences
Sobic.006G187100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G117400 expressed protein -
2 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
3 Sobic.004G323700 zinc finger family protein, putative, expressed -
4 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
5 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
6 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
7 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
8 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
9 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
10 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
11 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
12 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
13 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
14 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
15 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
16 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
17 Sobic.004G252900 transcription factor IIA large subunit, putative, expressed K03122: TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
18 Sobic.001G296900 dual specificity protein phosphatase, putative, expressed -
19 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
20 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -


Gene co-expression network
sample Sobic006G187100 Sobic006G187100 Sobic002G117400 Sobic002G117400 Sobic006G187100--Sobic002G117400 Sobic002G303600 Sobic002G303600 Sobic006G187100--Sobic002G303600 Sobic004G323700 Sobic004G323700 Sobic006G187100--Sobic004G323700 Sobic010G261600 Sobic010G261600 Sobic006G187100--Sobic010G261600 Sobic001G014800 Sobic001G014800 Sobic006G187100--Sobic001G014800 Sobic006G196300 Sobic006G196300 Sobic006G187100--Sobic006G196300 Sobic002G008800 Sobic002G008800 Sobic006G187100--Sobic002G008800 Sobic003G264100 Sobic003G264100 Sobic006G187100--Sobic003G264100 Sobic001G313500 Sobic001G313500 Sobic006G187100--Sobic001G313500 Sobic002G117400--Sobic004G323700 Sobic007G093800 Sobic007G093800 Sobic002G117400--Sobic007G093800 Sobic007G167900 Sobic007G167900 Sobic002G117400--Sobic007G167900 Sobic010G020400 Sobic010G020400 Sobic002G117400--Sobic010G020400 Sobic002G117400--Sobic002G303600 Sobic002G117400--Sobic002G008800 Sobic008G083200 Sobic008G083200 Sobic002G117400--Sobic008G083200 Sobic010G020300 Sobic010G020300 Sobic002G117400--Sobic010G020300 Sobic009G192000 Sobic009G192000 Sobic002G117400--Sobic009G192000 Sobic002G303600--Sobic010G261600 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic004G323700--Sobic002G117400 Sobic004G323700--Sobic007G218000 Sobic004G323700--Sobic002G303600 Sobic004G323700--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic004G323700--Sobic004G228800 Sobic010G278200 Sobic010G278200 Sobic004G323700--Sobic010G278200 Sobic006G174850 Sobic006G174850 Sobic004G323700--Sobic006G174850 Sobic006G131000 Sobic006G131000 Sobic004G323700--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic004G323700--Sobic004G039600 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic010G261600--Sobic002G303600 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G261600--Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic006G196300--Sobic003G264100 Sobic002G405400 Sobic002G405400 Sobic006G196300--Sobic002G405400 Sobic001G455800 Sobic001G455800 Sobic006G196300--Sobic001G455800 Sobic002G142900 Sobic002G142900 Sobic006G196300--Sobic002G142900 Sobic006G196300--Sobic010G020400 Sobic006G196300--Sobic001G333100 Sobic001G227400 Sobic001G227400 Sobic006G196300--Sobic001G227400 Sobic004G241900 Sobic004G241900 Sobic006G196300--Sobic004G241900 Sobic006G196300--Sobic002G303600 Sobic002G008800--Sobic010G261600 Sobic002G008800--Sobic010G020400 Sobic002G008800--Sobic002G262900 Sobic010G223300 Sobic010G223300 Sobic002G008800--Sobic010G223300 Sobic001G382600 Sobic001G382600 Sobic002G008800--Sobic001G382600 Sobic004G177300 Sobic004G177300 Sobic002G008800--Sobic004G177300 Sobic002G008800--Sobic004G275700 Sobic002G008800--Sobic001G333100 Sobic008G055900 Sobic008G055900 Sobic002G008800--Sobic008G055900 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic001G421400 Sobic001G421400 Sobic001G313500--Sobic001G421400 Sobic001G512400 Sobic001G512400 Sobic001G313500--Sobic001G512400 Sobic001G085900 Sobic001G085900 Sobic001G313500--Sobic001G085900 Sobic002G385900 Sobic002G385900 Sobic001G313500--Sobic002G385900 Sobic001G161900 Sobic001G161900 Sobic001G313500--Sobic001G161900 Sobic010G129600 Sobic010G129600 Sobic001G313500--Sobic010G129600 Sobic009G135600 Sobic009G135600 Sobic001G313500--Sobic009G135600 Sobic001G313500--Sobic010G261600 Sobic004G039300 Sobic004G039300 Sobic001G313500--Sobic004G039300
Octagon: transcription factors


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