Gene annotation
Transcriptome id Sobic.004G206700.1
Synonym Sb04g025220
Functional annotation vesicle transport protein GOT1B, putative, expressed
UniProt C5XX64
Pfam PF04178
Panther DB PTHR21493 PTHR21493:SF97
NCBI CDD KOG1743; Ferric reductase-like proteins
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport


Orthologs (automatic annotation)
TAIR AT1G05785 : Got1/Sft2-like vescicle transport protein family
RAP-DB (Rice) LOC_Os02g39070.1 : vesicle transport protein GOT1B, putative, expressed
MaizeGDB (Corn) Zm00025a031869
Brachypodium KQK00227 , KQK00229 , KQK00228 , KQK00230
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G206700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G405400 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, putative, expressed K01001: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
2 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
3 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
4 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
5 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
6 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
7 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
8 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -
9 Sobic.004G194900 expressed protein -
10 Sobic.009G225000 transmembrane protein 93, putative, expressed -
11 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
12 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
13 Sobic.001G261436 - -
14 Sobic.001G440800 myb/SANT domain protein, putative, expressed -
15 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
16 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
17 Sobic.004G181900 expressed protein -
18 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
19 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
20 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3


Gene co-expression network
sample Sobic004G206700 Sobic004G206700 Sobic002G405400 Sobic002G405400 Sobic004G206700--Sobic002G405400 Sobic009G084000 Sobic009G084000 Sobic004G206700--Sobic009G084000 Sobic001G199100 Sobic001G199100 Sobic004G206700--Sobic001G199100 Sobic010G223300 Sobic010G223300 Sobic004G206700--Sobic010G223300 Sobic003G338500 Sobic003G338500 Sobic004G206700--Sobic003G338500 Sobic006G180000 Sobic006G180000 Sobic004G206700--Sobic006G180000 Sobic009G123600 Sobic009G123600 Sobic004G206700--Sobic009G123600 Sobic002G059300 Sobic002G059300 Sobic004G206700--Sobic002G059300 Sobic004G194900 Sobic004G194900 Sobic004G206700--Sobic004G194900 Sobic006G196300 Sobic006G196300 Sobic002G405400--Sobic006G196300 Sobic002G405400--Sobic004G206700 Sobic010G020400 Sobic010G020400 Sobic002G405400--Sobic010G020400 Sobic008G055900 Sobic008G055900 Sobic002G405400--Sobic008G055900 Sobic004G241900 Sobic004G241900 Sobic002G405400--Sobic004G241900 Sobic002G405400--Sobic010G223300 Sobic008G085700 Sobic008G085700 Sobic002G405400--Sobic008G085700 Sobic006G260500 Sobic006G260500 Sobic002G405400--Sobic006G260500 Sobic002G405400--Sobic006G180000 Sobic003G220800 Sobic003G220800 Sobic009G084000--Sobic003G220800 Sobic010G131900 Sobic010G131900 Sobic009G084000--Sobic010G131900 Sobic001G014800 Sobic001G014800 Sobic009G084000--Sobic001G014800 Sobic009G084000--Sobic004G206700 Sobic004G054100 Sobic004G054100 Sobic009G084000--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic009G084000--Sobic002G047700 Sobic002G263600 Sobic002G263600 Sobic009G084000--Sobic002G263600 Sobic003G214500 Sobic003G214500 Sobic009G084000--Sobic003G214500 Sobic009G222500 Sobic009G222500 Sobic009G084000--Sobic009G222500 Sobic003G012200 Sobic003G012200 Sobic001G199100--Sobic003G012200 Sobic004G275700 Sobic004G275700 Sobic001G199100--Sobic004G275700 Sobic009G075800 Sobic009G075800 Sobic001G199100--Sobic009G075800 Sobic009G207000 Sobic009G207000 Sobic001G199100--Sobic009G207000 Sobic008G093000 Sobic008G093000 Sobic001G199100--Sobic008G093000 Sobic001G091300 Sobic001G091300 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic001G199100--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic001G199100--Sobic004G348300 Sobic010G223300--Sobic008G055900 Sobic001G449900 Sobic001G449900 Sobic010G223300--Sobic001G449900 Sobic002G020700 Sobic002G020700 Sobic010G223300--Sobic002G020700 Sobic010G223300--Sobic003G338500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic010G223300--Sobic006G180000 Sobic003G338500--Sobic010G223300 Sobic010G261600 Sobic010G261600 Sobic003G338500--Sobic010G261600 Sobic003G338500--Sobic010G020400 Sobic003G338500--Sobic004G275700 Sobic003G338500--Sobic008G055900 Sobic009G192000 Sobic009G192000 Sobic003G338500--Sobic009G192000 Sobic009G224000 Sobic009G224000 Sobic003G338500--Sobic009G224000 Sobic001G049400 Sobic001G049400 Sobic003G338500--Sobic001G049400 Sobic003G338500--Sobic002G008800 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic009G123600--Sobic002G059300 Sobic009G123600--Sobic009G222500 Sobic001G085100 Sobic001G085100 Sobic009G123600--Sobic001G085100 Sobic003G099100 Sobic003G099100 Sobic009G123600--Sobic003G099100 Sobic009G123600--Sobic001G199100 Sobic001G512300 Sobic001G512300 Sobic009G123600--Sobic001G512300 Sobic009G123600--Sobic004G206700 Sobic009G123600--Sobic003G012200 Sobic007G166100 Sobic007G166100 Sobic009G123600--Sobic007G166100 Sobic002G059300--Sobic009G123600 Sobic001G121200 Sobic001G121200 Sobic002G059300--Sobic001G121200 Sobic001G067400 Sobic001G067400 Sobic002G059300--Sobic001G067400 Sobic009G056200 Sobic009G056200 Sobic002G059300--Sobic009G056200 Sobic002G059300--Sobic004G206700 Sobic002G059300--Sobic004G348300 Sobic002G347000 Sobic002G347000 Sobic002G059300--Sobic002G347000 Sobic010G027600 Sobic010G027600 Sobic002G059300--Sobic010G027600 Sobic006G199200 Sobic006G199200 Sobic002G059300--Sobic006G199200 Sobic010G205300 Sobic010G205300 Sobic004G194900--Sobic010G205300 Sobic002G281300 Sobic002G281300 Sobic004G194900--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic004G194900--Sobic006G044600 Sobic003G349300 Sobic003G349300 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G310500 Sobic004G310500 Sobic004G194900--Sobic004G310500 Sobic001G458700 Sobic001G458700 Sobic004G194900--Sobic001G458700 Sobic004G194900--Sobic001G085100 Sobic005G111900 Sobic005G111900 Sobic004G194900--Sobic005G111900
Octagon: transcription factors


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