Gene annotation
Transcriptome id Sobic.002G059300.1
Synonym Sb02g004980
Functional annotation OsFBX181 - F-box domain containing protein, expressed
UniProt C5XBR5
Pfam PF03478
Panther DB PTHR33800 PTHR33800:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25750 : F-box family protein with a domain of unknown function (DUF295)
RAP-DB (Rice) LOC_Os06g02100.1 : OsFBX181 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045261
Brachypodium PNT76603 , KQK19761
Barley HORVU7Hr1G006250.8 , HORVU7Hr1G006250.9 , HORVU7Hr1G006250.6 , HORVU7Hr1G006250.7 , HORVU7Hr1G006250.4 , HORVU7Hr1G006250.5 , HORVU7Hr1G006250.1 , HORVU7Hr1G006250.2 , HORVU7Hr1G006250.3 , HORVU7Hr1G006250.10 , HORVU7Hr1G006250.11 , HORVU7Hr1G006250.12 , HORVU7Hr1G006250.13 , HORVU1Hr1G040130.2 , HORVU1Hr1G040130.1
Wheat TraesCS5B02G526700 , TraesCS7D02G059500 , TraesCS5B02G526900 , TraesCS5B02G526900 , TraesCS5B02G526800 , TraesCS5B02G526800 , TraesCS4A02G453500 , TraesCS2B02G164900 , TraesCS2B02G164900 , TraesCS7D02G031900 , TraesCS5D02G525900 , TraesCS5D02G525900 , TraesCS2D02G143600 , TraesCS7A02G064900 , TraesCS2D02G144100 , TraesCS7A02G035400 , TraesCS2B02G164700 , TraesCS4A02G346500 , TraesCS4A02G346500 , TraesCS4A02G346500 , TraesCS4A02G346500 , TraesCS2B02G165300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
2 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.001G067400 arv1, putative, expressed -
4 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
5 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
6 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
7 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
8 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
9 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
10 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
11 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
12 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
14 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
15 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
16 Sobic.002G111000 peptidase, putative, expressed -
17 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
18 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
19 Sobic.002G352600 expressed protein -
20 Sobic.006G160300 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G059300 Sobic002G059300 Sobic009G123600 Sobic009G123600 Sobic002G059300--Sobic009G123600 Sobic001G121200 Sobic001G121200 Sobic002G059300--Sobic001G121200 Sobic001G067400 Sobic001G067400 Sobic002G059300--Sobic001G067400 Sobic009G056200 Sobic009G056200 Sobic002G059300--Sobic009G056200 Sobic004G206700 Sobic004G206700 Sobic002G059300--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic002G059300--Sobic004G348300 Sobic002G347000 Sobic002G347000 Sobic002G059300--Sobic002G347000 Sobic010G027600 Sobic010G027600 Sobic002G059300--Sobic010G027600 Sobic006G199200 Sobic006G199200 Sobic002G059300--Sobic006G199200 Sobic009G123600--Sobic002G059300 Sobic009G222500 Sobic009G222500 Sobic009G123600--Sobic009G222500 Sobic001G085100 Sobic001G085100 Sobic009G123600--Sobic001G085100 Sobic003G099100 Sobic003G099100 Sobic009G123600--Sobic003G099100 Sobic001G199100 Sobic001G199100 Sobic009G123600--Sobic001G199100 Sobic001G512300 Sobic001G512300 Sobic009G123600--Sobic001G512300 Sobic009G123600--Sobic004G206700 Sobic003G012200 Sobic003G012200 Sobic009G123600--Sobic003G012200 Sobic007G166100 Sobic007G166100 Sobic009G123600--Sobic007G166100 Sobic001G390800 Sobic001G390800 Sobic001G121200--Sobic001G390800 Sobic010G205800 Sobic010G205800 Sobic001G121200--Sobic010G205800 Sobic001G268200 Sobic001G268200 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic010G147100 Sobic010G147100 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic001G121200--Sobic009G056200 Sobic001G067400--Sobic002G059300 Sobic007G167900 Sobic007G167900 Sobic001G067400--Sobic007G167900 Sobic006G101700 Sobic006G101700 Sobic001G067400--Sobic006G101700 Sobic001G067400--Sobic004G206700 Sobic001G067400--Sobic001G085100 Sobic006G180000 Sobic006G180000 Sobic001G067400--Sobic006G180000 Sobic004G092500 Sobic004G092500 Sobic001G067400--Sobic004G092500 Sobic010G130000 Sobic010G130000 Sobic001G067400--Sobic010G130000 Sobic001G067400--Sobic009G123600 Sobic005G172500 Sobic005G172500 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic002G142900 Sobic002G142900 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic002G405400 Sobic002G405400 Sobic004G206700--Sobic002G405400 Sobic009G084000 Sobic009G084000 Sobic004G206700--Sobic009G084000 Sobic004G206700--Sobic001G199100 Sobic010G223300 Sobic010G223300 Sobic004G206700--Sobic010G223300 Sobic003G338500 Sobic003G338500 Sobic004G206700--Sobic003G338500 Sobic004G206700--Sobic006G180000 Sobic004G206700--Sobic009G123600 Sobic004G206700--Sobic002G059300 Sobic004G194900 Sobic004G194900 Sobic004G206700--Sobic004G194900 Sobic004G348300--Sobic003G012200 Sobic003G344900 Sobic003G344900 Sobic004G348300--Sobic003G344900 Sobic004G348300--Sobic001G199100 Sobic002G352600 Sobic002G352600 Sobic004G348300--Sobic002G352600 Sobic006G249700 Sobic006G249700 Sobic004G348300--Sobic006G249700 Sobic004G006200 Sobic004G006200 Sobic004G348300--Sobic004G006200 Sobic004G348300--Sobic002G059300 Sobic009G217100 Sobic009G217100 Sobic004G348300--Sobic009G217100 Sobic005G004200 Sobic005G004200 Sobic004G348300--Sobic005G004200 Sobic003G143200 Sobic003G143200 Sobic002G347000--Sobic003G143200 Sobic005G160400 Sobic005G160400 Sobic002G347000--Sobic005G160400 Sobic001G309400 Sobic001G309400 Sobic002G347000--Sobic001G309400 Sobic002G347000--Sobic006G180000 Sobic007G115200 Sobic007G115200 Sobic002G347000--Sobic007G115200 Sobic002G347000--Sobic006G199200 Sobic002G347000--Sobic007G167900 Sobic001G281600 Sobic001G281600 Sobic002G347000--Sobic001G281600 Sobic008G076800 Sobic008G076800 Sobic002G347000--Sobic008G076800 Sobic010G018700 Sobic010G018700 Sobic010G027600--Sobic010G018700 Sobic004G066200 Sobic004G066200 Sobic010G027600--Sobic004G066200 Sobic010G027600--Sobic009G222500 Sobic010G027600--Sobic002G352600 Sobic009G179700 Sobic009G179700 Sobic010G027600--Sobic009G179700 Sobic002G110700 Sobic002G110700 Sobic010G027600--Sobic002G110700 Sobic002G192200 Sobic002G192200 Sobic010G027600--Sobic002G192200 Sobic009G228700 Sobic009G228700 Sobic010G027600--Sobic009G228700 Sobic006G049700 Sobic006G049700 Sobic010G027600--Sobic006G049700 Sobic006G199200--Sobic003G195000 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic001G241100 Sobic001G241100 Sobic006G199200--Sobic001G241100 Sobic005G027400 Sobic005G027400 Sobic006G199200--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic006G199200--Sobic010G079900 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic001G289800 Sobic001G289800 Sobic006G199200--Sobic001G289800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.