Gene annotation
Transcriptome id Sobic.001G067400.1
Synonym ARV2, Sb01g006130
Functional annotation arv1, putative, expressed
UniProt C5WY86
Pfam PF04161
Panther DB PTHR14467
NCBI CDD KOG3134; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01020 : Arv1-like protein
RAP-DB (Rice) LOC_Os03g57090.1 : arv1, putative, expressed
MaizeGDB (Corn) Zm00025a008452
Brachypodium KQK12882
Barley HORVU5Hr1G103080.36 , HORVU5Hr1G103080.28 , HORVU5Hr1G103080.29 , HORVU5Hr1G103080.32 , HORVU5Hr1G103080.20 , HORVU5Hr1G103080.21 , HORVU5Hr1G103080.22 , HORVU5Hr1G103080.23 , HORVU5Hr1G103080.24 , HORVU5Hr1G103080.17 , HORVU5Hr1G103080.26 , HORVU5Hr1G103080.27 , HORVU5Hr1G103080.30 , HORVU5Hr1G103080.11 , HORVU5Hr1G103080.25 , HORVU5Hr1G103080.9 , HORVU5Hr1G103080.8 , HORVU5Hr1G103080.13 , HORVU5Hr1G103080.1 , HORVU5Hr1G103080.3 , HORVU5Hr1G103080.2 , HORVU5Hr1G103080.5 , HORVU5Hr1G103080.4 , HORVU5Hr1G103080.7 , HORVU5Hr1G103080.6 , HORVU5Hr1G103080.34 , HORVU5Hr1G103080.39 , HORVU5Hr1G103080.38 , HORVU5Hr1G103080.19 , HORVU5Hr1G103080.18 , HORVU5Hr1G103080.33 , HORVU5Hr1G103080.14 , HORVU5Hr1G103080.31 , HORVU5Hr1G103080.16 , HORVU5Hr1G103080.37 , HORVU5Hr1G103080.10 , HORVU5Hr1G103080.35 , HORVU5Hr1G103080.12 , HORVU5Hr1G103080.48 , HORVU5Hr1G103080.46 , HORVU5Hr1G103080.47 , HORVU5Hr1G103080.44 , HORVU5Hr1G103080.45 , HORVU5Hr1G103080.42 , HORVU5Hr1G103080.43 , HORVU5Hr1G103080.40 , HORVU5Hr1G103080.15
Wheat TraesCS5D02G430500 , TraesCS5B02G424300 , TraesCS5B02G424300 , TraesCS5B02G424300 , TraesCS5A02G422300
Populus -


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cDNA sequences
Sobic.001G067400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -
2 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
3 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
4 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
5 Sobic.001G085100 expressed protein -
6 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
7 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
8 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
9 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
10 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
11 Sobic.007G077400 dehydrogenase, putative, expressed K07512: MECR, mitochondrial enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase
12 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
13 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
14 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
15 Sobic.010G235200 oral cancer overexpressed protein 1, putative, expressed -
16 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
17 Sobic.002G192200 proteasome subunit, putative, expressed -
18 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
19 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
20 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase


Gene co-expression network
sample Sobic001G067400 Sobic001G067400 Sobic002G059300 Sobic002G059300 Sobic001G067400--Sobic002G059300 Sobic007G167900 Sobic007G167900 Sobic001G067400--Sobic007G167900 Sobic006G101700 Sobic006G101700 Sobic001G067400--Sobic006G101700 Sobic004G206700 Sobic004G206700 Sobic001G067400--Sobic004G206700 Sobic001G085100 Sobic001G085100 Sobic001G067400--Sobic001G085100 Sobic006G180000 Sobic006G180000 Sobic001G067400--Sobic006G180000 Sobic004G092500 Sobic004G092500 Sobic001G067400--Sobic004G092500 Sobic010G130000 Sobic010G130000 Sobic001G067400--Sobic010G130000 Sobic009G123600 Sobic009G123600 Sobic001G067400--Sobic009G123600 Sobic002G059300--Sobic009G123600 Sobic001G121200 Sobic001G121200 Sobic002G059300--Sobic001G121200 Sobic002G059300--Sobic001G067400 Sobic009G056200 Sobic009G056200 Sobic002G059300--Sobic009G056200 Sobic002G059300--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic002G059300--Sobic004G348300 Sobic002G347000 Sobic002G347000 Sobic002G059300--Sobic002G347000 Sobic010G027600 Sobic010G027600 Sobic002G059300--Sobic010G027600 Sobic006G199200 Sobic006G199200 Sobic002G059300--Sobic006G199200 Sobic007G167900--Sobic001G085100 Sobic009G192000 Sobic009G192000 Sobic007G167900--Sobic009G192000 Sobic007G167900--Sobic004G092500 Sobic001G206900 Sobic001G206900 Sobic007G167900--Sobic001G206900 Sobic002G047700 Sobic002G047700 Sobic007G167900--Sobic002G047700 Sobic007G167900--Sobic006G101700 Sobic010G020400 Sobic010G020400 Sobic007G167900--Sobic010G020400 Sobic009G222500 Sobic009G222500 Sobic007G167900--Sobic009G222500 Sobic001G341500 Sobic001G341500 Sobic007G167900--Sobic001G341500 Sobic004G066200 Sobic004G066200 Sobic006G101700--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic006G101700--Sobic007G166400 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G049700 Sobic006G049700 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic002G405400 Sobic002G405400 Sobic004G206700--Sobic002G405400 Sobic009G084000 Sobic009G084000 Sobic004G206700--Sobic009G084000 Sobic001G199100 Sobic001G199100 Sobic004G206700--Sobic001G199100 Sobic010G223300 Sobic010G223300 Sobic004G206700--Sobic010G223300 Sobic003G338500 Sobic003G338500 Sobic004G206700--Sobic003G338500 Sobic004G206700--Sobic006G180000 Sobic004G206700--Sobic009G123600 Sobic004G206700--Sobic002G059300 Sobic004G194900 Sobic004G194900 Sobic004G206700--Sobic004G194900 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic001G085100--Sobic007G167900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic001G085100--Sobic004G066200 Sobic001G091300 Sobic001G091300 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic007G132100 Sobic007G132100 Sobic004G092500--Sobic007G132100 Sobic001G493200 Sobic001G493200 Sobic004G092500--Sobic001G493200 Sobic004G092500--Sobic010G223300 Sobic003G143200 Sobic003G143200 Sobic004G092500--Sobic003G143200 Sobic004G092500--Sobic010G020400 Sobic004G257100 Sobic004G257100 Sobic004G092500--Sobic004G257100 Sobic004G039600 Sobic004G039600 Sobic004G092500--Sobic004G039600 Sobic006G077200 Sobic006G077200 Sobic004G092500--Sobic006G077200 Sobic004G092500--Sobic007G167900 Sobic006G033200 Sobic006G033200 Sobic010G130000--Sobic006G033200 Sobic010G278200 Sobic010G278200 Sobic010G130000--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic010G130000--Sobic009G138100 Sobic006G034000 Sobic006G034000 Sobic010G130000--Sobic006G034000 Sobic003G312200 Sobic003G312200 Sobic010G130000--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic010G130000--Sobic001G124200 Sobic001G390800 Sobic001G390800 Sobic010G130000--Sobic001G390800 Sobic010G130000--Sobic001G085100 Sobic008G124900 Sobic008G124900 Sobic010G130000--Sobic008G124900 Sobic009G123600--Sobic002G059300 Sobic009G123600--Sobic009G222500 Sobic009G123600--Sobic001G085100 Sobic003G099100 Sobic003G099100 Sobic009G123600--Sobic003G099100 Sobic009G123600--Sobic001G199100 Sobic009G123600--Sobic001G512300 Sobic009G123600--Sobic004G206700 Sobic009G123600--Sobic003G012200 Sobic007G166100 Sobic007G166100 Sobic009G123600--Sobic007G166100
Octagon: transcription factors


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