Gene annotation
Transcriptome id Sobic.006G160300.2,Sobic.006G160300.3
Synonym Sb06g023720
Functional annotation DNA binding protein, putative, expressed
UniProt A0A1Z5REJ6 , C5YCY0
Pfam -
Panther DB PTHR33918 PTHR33918:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G60590 : -
RAP-DB (Rice) LOC_Os04g45200.2 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a040669 , Zm00025a056592
Brachypodium KQJ83787
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G160300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
2 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
3 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
6 Sobic.003G086900 C2 domain containing protein, putative, expressed -
7 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
8 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
9 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
10 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
11 Sobic.003G110000 TBC domain containing protein, expressed -
12 Sobic.002G193100 expressed protein -
13 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
14 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
15 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
16 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
17 Sobic.002G111000 peptidase, putative, expressed -
18 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
19 Sobic.001G508100 expressed protein -
20 Sobic.001G289800 BAH domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G160300 Sobic006G160300 Sobic003G195000 Sobic003G195000 Sobic006G160300--Sobic003G195000 Sobic006G199200 Sobic006G199200 Sobic006G160300--Sobic006G199200 Sobic001G121200 Sobic001G121200 Sobic006G160300--Sobic001G121200 Sobic001G268200 Sobic001G268200 Sobic006G160300--Sobic001G268200 Sobic009G056200 Sobic009G056200 Sobic006G160300--Sobic009G056200 Sobic003G086900 Sobic003G086900 Sobic006G160300--Sobic003G086900 Sobic007G193700 Sobic007G193700 Sobic006G160300--Sobic007G193700 Sobic010G147100 Sobic010G147100 Sobic006G160300--Sobic010G147100 Sobic003G220800 Sobic003G220800 Sobic006G160300--Sobic003G220800 Sobic001G289800 Sobic001G289800 Sobic003G195000--Sobic001G289800 Sobic001G194200 Sobic001G194200 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic002G142900 Sobic002G142900 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic006G199200--Sobic003G195000 Sobic010G205800 Sobic010G205800 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic001G241100 Sobic001G241100 Sobic006G199200--Sobic001G241100 Sobic005G027400 Sobic005G027400 Sobic006G199200--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic006G199200--Sobic010G079900 Sobic006G199200--Sobic001G121200 Sobic006G199200--Sobic006G160300 Sobic006G199200--Sobic001G289800 Sobic001G390800 Sobic001G390800 Sobic001G121200--Sobic001G390800 Sobic001G121200--Sobic010G205800 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic001G121200--Sobic009G056200 Sobic001G268200--Sobic001G390800 Sobic010G013200 Sobic010G013200 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic003G313500 Sobic003G313500 Sobic001G268200--Sobic003G313500 Sobic001G268200--Sobic001G121200 Sobic010G139600 Sobic010G139600 Sobic001G268200--Sobic010G139600 Sobic001G085300 Sobic001G085300 Sobic001G268200--Sobic001G085300 Sobic001G268200--Sobic001G194200 Sobic001G268200--Sobic009G053900 Sobic005G172500 Sobic005G172500 Sobic009G056200--Sobic005G172500 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic010G196500 Sobic010G196500 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic003G086900--Sobic001G390800 Sobic003G086900--Sobic001G268200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic004G263600 Sobic004G263600 Sobic007G193700--Sobic004G263600 Sobic007G193700--Sobic003G086900 Sobic004G200200 Sobic004G200200 Sobic007G193700--Sobic004G200200 Sobic007G193700--Sobic004G174200 Sobic002G134200 Sobic002G134200 Sobic007G193700--Sobic002G134200 Sobic010G239600 Sobic010G239600 Sobic007G193700--Sobic010G239600 Sobic003G139900 Sobic003G139900 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic003G396200 Sobic003G396200 Sobic007G193700--Sobic003G396200 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic009G084000 Sobic009G084000 Sobic003G220800--Sobic009G084000 Sobic001G100900 Sobic001G100900 Sobic003G220800--Sobic001G100900 Sobic003G043300 Sobic003G043300 Sobic003G220800--Sobic003G043300 Sobic003G220800--Sobic010G074300 Sobic003G220800--Sobic001G241100 Sobic002G359400 Sobic002G359400 Sobic003G220800--Sobic002G359400 Sobic002G047700 Sobic002G047700 Sobic003G220800--Sobic002G047700 Sobic006G092400 Sobic006G092400 Sobic003G220800--Sobic006G092400 Sobic010G147000 Sobic010G147000 Sobic003G220800--Sobic010G147000
Octagon: transcription factors


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