Gene annotation
Transcriptome id Sobic.001G241100.1,Sobic.001G241100.4,Sobic.001G241100.3,Sobic.001G241100.2
Synonym Sb01g021330
Functional annotation DNA-binding protein-like, putative, expressed
UniProt A0A1Z5S7F1 , A0A1Z5S726 , C5X1D4 , A0A1Z5S7L9
Pfam PF13696 PF08783
Panther DB PTHR15439 PTHR15439:SF7
NCBI CDD KOG0314; Predicted E3 ubiquitin ligase
KEGG Orthology K10624; E3 ubiquitin-protein ligase RBBP6
Gene Ontology GO:0008270; zinc ion binding GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G47430 : DWNN domain, a CCHC-type zinc finger
RAP-DB (Rice) LOC_Os10g29560.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a006847
Brachypodium PNT69230 , KQJ96790 , PNT67408 , PNT67407 , PNT67406 , PNT69231 , KQK00758
Barley HORVU6Hr1G065530.9 , HORVU6Hr1G065530.8 , HORVU6Hr1G065530.1 , HORVU6Hr1G065530.3 , HORVU6Hr1G065530.2 , HORVU6Hr1G065530.5 , HORVU6Hr1G065530.4 , HORVU6Hr1G065530.7 , HORVU6Hr1G065530.6 , HORVU6Hr1G065530.21 , HORVU6Hr1G065530.22 , HORVU6Hr1G065530.23 , HORVU6Hr1G065530.20 , HORVU6Hr1G065530.19 , HORVU6Hr1G065530.18 , HORVU6Hr1G065530.15 , HORVU6Hr1G065530.14 , HORVU6Hr1G065530.17 , HORVU6Hr1G065530.16 , HORVU6Hr1G065530.11 , HORVU6Hr1G065530.10 , HORVU6Hr1G065530.13 , HORVU6Hr1G065530.12
Wheat TraesCS6B02G268200 , TraesCS6B02G268200 , TraesCS6D02G238100 , TraesCS6D02G238100 , TraesCS6D02G238100 , TraesCS6A02G256800 , TraesCS6A02G256800 , TraesCS6A02G256800 , TraesCS6D02G238100 , TraesCS6A02G256800
Populus -


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cDNA sequences
Sobic.001G241100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
2 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
3 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
4 Sobic.001G289800 BAH domain containing protein, putative, expressed -
5 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
7 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
8 Sobic.001G289600 BAH domain containing protein, putative, expressed -
9 Sobic.001G079200 STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
10 Sobic.010G143800 expressed protein -
11 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
13 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
14 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
15 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
16 Sobic.003G086900 C2 domain containing protein, putative, expressed -
17 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
18 Sobic.001G261501 - -
19 Sobic.003G316500 expressed protein -
20 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1


Gene co-expression network
sample Sobic001G241100 Sobic001G241100 Sobic002G294800 Sobic002G294800 Sobic001G241100--Sobic002G294800 Sobic005G027400 Sobic005G027400 Sobic001G241100--Sobic005G027400 Sobic003G195000 Sobic003G195000 Sobic001G241100--Sobic003G195000 Sobic001G289800 Sobic001G289800 Sobic001G241100--Sobic001G289800 Sobic001G268200 Sobic001G268200 Sobic001G241100--Sobic001G268200 Sobic006G199200 Sobic006G199200 Sobic001G241100--Sobic006G199200 Sobic010G147100 Sobic010G147100 Sobic001G241100--Sobic010G147100 Sobic001G289600 Sobic001G289600 Sobic001G241100--Sobic001G289600 Sobic001G079200 Sobic001G079200 Sobic001G241100--Sobic001G079200 Sobic002G294800--Sobic005G027400 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic003G195000--Sobic001G289800 Sobic001G194200 Sobic001G194200 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic002G142900 Sobic002G142900 Sobic003G195000--Sobic002G142900 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic001G289800--Sobic001G289600 Sobic003G422500 Sobic003G422500 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic001G289800--Sobic004G291900 Sobic004G034900 Sobic004G034900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic001G289800--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic001G390800 Sobic001G390800 Sobic001G268200--Sobic001G390800 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic003G313500 Sobic003G313500 Sobic001G268200--Sobic003G313500 Sobic001G121200 Sobic001G121200 Sobic001G268200--Sobic001G121200 Sobic010G139600 Sobic010G139600 Sobic001G268200--Sobic010G139600 Sobic001G085300 Sobic001G085300 Sobic001G268200--Sobic001G085300 Sobic001G268200--Sobic001G194200 Sobic001G268200--Sobic009G053900 Sobic006G199200--Sobic003G195000 Sobic010G205800 Sobic010G205800 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic006G199200--Sobic001G241100 Sobic006G199200--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic006G199200--Sobic010G079900 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic006G199200--Sobic001G289800 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic001G540400 Sobic001G540400 Sobic001G289600--Sobic001G540400 Sobic001G289600--Sobic004G034900 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic001G289600--Sobic001G365900 Sobic009G191000 Sobic009G191000 Sobic001G289600--Sobic009G191000 Sobic005G008800 Sobic005G008800 Sobic001G289600--Sobic005G008800 Sobic007G105100 Sobic007G105100 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic001G079200--Sobic001G390800 Sobic001G079200--Sobic010G205800 Sobic003G233600 Sobic003G233600 Sobic001G079200--Sobic003G233600 Sobic001G079200--Sobic001G241100 Sobic006G126100 Sobic006G126100 Sobic001G079200--Sobic006G126100 Sobic001G007000 Sobic001G007000 Sobic001G079200--Sobic001G007000 Sobic003G273600 Sobic003G273600 Sobic001G079200--Sobic003G273600 Sobic003G169600 Sobic003G169600 Sobic001G079200--Sobic003G169600 Sobic001G000200 Sobic001G000200 Sobic001G079200--Sobic001G000200
Octagon: transcription factors


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