Gene annotation
Transcriptome id Sobic.010G013200.1
Synonym Sb10g001310
Functional annotation CPuORF21 - conserved peptide uORF-containing transcript, expressed
UniProt C5Z2U5
Pfam PF00069
Panther DB PTHR24055 PTHR24055:SF192
NCBI CDD KOG0659; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7
KEGG Orthology K08829; male germ cell-associated kinase
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G19110 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os06g02550.1 : CPuORF21 - conserved peptide uORF-containing transcript, expressed
MaizeGDB (Corn) Zm00025a041310 , Zm00025a032455
Brachypodium KQK19809 , KQK19792
Barley HORVU7Hr1G008690.25 , HORVU7Hr1G008690.24 , HORVU7Hr1G008690.23 , HORVU7Hr1G008690.22 , HORVU7Hr1G008690.21 , HORVU7Hr1G008690.20 , HORVU7Hr1G008690.19 , HORVU7Hr1G008690.16 , HORVU7Hr1G008690.17 , HORVU7Hr1G008690.14 , HORVU7Hr1G008690.15 , HORVU7Hr1G008690.12 , HORVU7Hr1G008690.13 , HORVU7Hr1G008690.10 , HORVU7Hr1G008690.11 , HORVU7Hr1G008690.8 , HORVU7Hr1G008690.9 , HORVU7Hr1G008690.4 , HORVU7Hr1G008690.5 , HORVU7Hr1G008690.6 , HORVU7Hr1G008690.7 , HORVU7Hr1G008690.1 , HORVU7Hr1G008690.2 , HORVU7Hr1G008690.3 , HORVU7Hr1G008690.18
Wheat TraesCS4A02G434800 , TraesCS7A02G049000 , TraesCS7A02G049000 , TraesCS7A02G049000 , TraesCS7D02G044100
Populus -


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cDNA sequences
Sobic.010G013200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.008G081300 protein kinase, putative, expressed -
3 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
5 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
6 Sobic.006G086500 STE_MEKK_ste11_MAP3K.16 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
7 Sobic.009G201300 - -
8 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
9 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
10 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
11 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
12 Sobic.003G340600 VHS and GAT domain containing protein, expressed -
13 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
14 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
15 Sobic.010G074300 smr domain containing protein, expressed -
16 Sobic.004G040900 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
17 Sobic.002G345700 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
18 Sobic.001G396000 OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed -
19 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.004G181600 calmodulin binding protein, putative, expressed -


Gene co-expression network
sample Sobic010G013200 Sobic010G013200 Sobic001G268200 Sobic001G268200 Sobic010G013200--Sobic001G268200 Sobic008G081300 Sobic008G081300 Sobic010G013200--Sobic008G081300 Sobic002G311100 Sobic002G311100 Sobic010G013200--Sobic002G311100 Sobic001G049500 Sobic001G049500 Sobic010G013200--Sobic001G049500 Sobic002G294800 Sobic002G294800 Sobic010G013200--Sobic002G294800 Sobic006G086500 Sobic006G086500 Sobic010G013200--Sobic006G086500 Sobic009G201300 Sobic009G201300 Sobic010G013200--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic010G013200--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic010G013200--Sobic010G147100 Sobic001G390800 Sobic001G390800 Sobic001G268200--Sobic001G390800 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic003G313500 Sobic003G313500 Sobic001G268200--Sobic003G313500 Sobic001G121200 Sobic001G121200 Sobic001G268200--Sobic001G121200 Sobic010G139600 Sobic010G139600 Sobic001G268200--Sobic010G139600 Sobic001G085300 Sobic001G085300 Sobic001G268200--Sobic001G085300 Sobic001G194200 Sobic001G194200 Sobic001G268200--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic001G268200--Sobic009G053900 Sobic008G081300--Sobic010G013200 Sobic008G081300--Sobic001G049500 Sobic006G083800 Sobic006G083800 Sobic008G081300--Sobic006G083800 Sobic002G001000 Sobic002G001000 Sobic008G081300--Sobic002G001000 Sobic008G172300 Sobic008G172300 Sobic008G081300--Sobic008G172300 Sobic008G081300--Sobic001G268200 Sobic001G396000 Sobic001G396000 Sobic008G081300--Sobic001G396000 Sobic001G402500 Sobic001G402500 Sobic008G081300--Sobic001G402500 Sobic004G026500 Sobic004G026500 Sobic008G081300--Sobic004G026500 Sobic002G311100--Sobic010G147100 Sobic002G311100--Sobic009G074400 Sobic002G311100--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic010G074300 Sobic010G074300 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic001G049500--Sobic010G013200 Sobic001G049500--Sobic008G081300 Sobic001G049500--Sobic009G201300 Sobic001G049500--Sobic002G311100 Sobic001G251100 Sobic001G251100 Sobic001G049500--Sobic001G251100 Sobic003G340600 Sobic003G340600 Sobic001G049500--Sobic003G340600 Sobic001G241100 Sobic001G241100 Sobic001G049500--Sobic001G241100 Sobic006G219600 Sobic006G219600 Sobic001G049500--Sobic006G219600 Sobic001G049500--Sobic001G396000 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic002G294800--Sobic010G013200 Sobic001G191600 Sobic001G191600 Sobic006G086500--Sobic001G191600 Sobic006G086500--Sobic010G013200 Sobic006G086500--Sobic002G294800 Sobic006G086500--Sobic001G268200 Sobic006G086500--Sobic008G172300 Sobic003G221900 Sobic003G221900 Sobic006G086500--Sobic003G221900 Sobic006G086500--Sobic003G340600 Sobic004G181700 Sobic004G181700 Sobic006G086500--Sobic004G181700 Sobic006G086500--Sobic001G389100 Sobic009G201300--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic009G201300--Sobic003G155100 Sobic006G050700 Sobic006G050700 Sobic009G201300--Sobic006G050700 Sobic003G119600 Sobic003G119600 Sobic009G201300--Sobic003G119600 Sobic004G244900 Sobic004G244900 Sobic009G201300--Sobic004G244900 Sobic001G133000 Sobic001G133000 Sobic009G201300--Sobic001G133000 Sobic008G001200 Sobic008G001200 Sobic009G201300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic009G201300--Sobic001G457800 Sobic009G201300--Sobic002G211800 Sobic003G316500 Sobic003G316500 Sobic009G074400--Sobic003G316500 Sobic001G534700 Sobic001G534700 Sobic009G074400--Sobic001G534700 Sobic009G074400--Sobic003G155100 Sobic003G198800 Sobic003G198800 Sobic009G074400--Sobic003G198800 Sobic009G074400--Sobic002G311100 Sobic006G051800 Sobic006G051800 Sobic009G074400--Sobic006G051800 Sobic009G074400--Sobic006G219600 Sobic009G074400--Sobic008G001200 Sobic004G001500 Sobic004G001500 Sobic009G074400--Sobic004G001500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200
Octagon: transcription factors


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