Gene annotation
Transcriptome id Sobic.004G348300.3,Sobic.004G348300.2,Sobic.004G348300.1
Synonym TOPP4, Sb04g037500
Functional annotation Ser/Thr protein phosphatase family protein, putative, expressed
UniProt A0A194YT76 , A0A194YU61
Pfam PF16891 PF00149
Panther DB PTHR11668 PTHR11668:SF280
NCBI CDD -
KEGG Orthology K06269; serine/threonine-protein phosphatase PP1 catalytic subunit
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT5G59160 : type one serine/threonine protein phosphatase 2,type one serine/threonine protein phosphatase 4
RAP-DB (Rice) LOC_Os02g57450.2 : Ser/Thr protein phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032780 , Zm00025a022629
Brachypodium KQK01402 , KQK01403 , KQK01405 , KQK01404
Barley HORVU6Hr1G091550.1 , HORVU6Hr1G091550.2 , HORVU6Hr1G091550.3 , HORVU6Hr1G091550.4 , HORVU6Hr1G091550.5 , HORVU6Hr1G091550.6 , HORVU6Hr1G091550.7 , HORVU6Hr1G091550.8 , HORVU6Hr1G091550.9 , HORVU6Hr1G091550.12 , HORVU6Hr1G091550.13 , HORVU6Hr1G091550.10 , HORVU6Hr1G091550.11 , HORVU6Hr1G091550.16 , HORVU6Hr1G091550.14 , HORVU6Hr1G091550.15
Wheat TraesCS5A02G373900 , TraesCS6B02G436400 , TraesCS6B02G436400 , TraesCS6D02G381300 , TraesCS6A02G396400
Populus -


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cDNA sequences
Sobic.004G348300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
2 Sobic.003G344900 selT-like protein precursor, putative, expressed -
3 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
4 Sobic.002G352600 expressed protein -
5 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
6 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
7 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -
8 Sobic.009G217100 phosphatidylinositol transfer, putative, expressed -
9 Sobic.005G004200 GIL1, putative, expressed -
10 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
11 Sobic.003G063000 expressed protein -
12 Sobic.001G181700 expressed protein -
13 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
14 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
15 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
16 Sobic.004G119200 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
17 Sobic.001G000200 TBC domain containing protein, expressed -
18 Sobic.003G001100 Lg106, putative, expressed -
19 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
20 Sobic.010G000900 spotted leaf 11, putative, expressed -


Gene co-expression network
sample Sobic004G348300 Sobic004G348300 Sobic003G012200 Sobic003G012200 Sobic004G348300--Sobic003G012200 Sobic003G344900 Sobic003G344900 Sobic004G348300--Sobic003G344900 Sobic001G199100 Sobic001G199100 Sobic004G348300--Sobic001G199100 Sobic002G352600 Sobic002G352600 Sobic004G348300--Sobic002G352600 Sobic006G249700 Sobic006G249700 Sobic004G348300--Sobic006G249700 Sobic004G006200 Sobic004G006200 Sobic004G348300--Sobic004G006200 Sobic002G059300 Sobic002G059300 Sobic004G348300--Sobic002G059300 Sobic009G217100 Sobic009G217100 Sobic004G348300--Sobic009G217100 Sobic005G004200 Sobic005G004200 Sobic004G348300--Sobic005G004200 Sobic003G012200--Sobic001G199100 Sobic003G012200--Sobic003G344900 Sobic010G000900 Sobic010G000900 Sobic003G012200--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic003G012200--Sobic001G085100 Sobic003G012200--Sobic004G348300 Sobic009G075800 Sobic009G075800 Sobic003G012200--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic003G012200--Sobic004G275700 Sobic009G259400 Sobic009G259400 Sobic003G012200--Sobic009G259400 Sobic001G047400 Sobic001G047400 Sobic003G012200--Sobic001G047400 Sobic003G344900--Sobic003G012200 Sobic003G344900--Sobic010G000900 Sobic003G344900--Sobic004G348300 Sobic003G344900--Sobic009G259400 Sobic005G044800 Sobic005G044800 Sobic003G344900--Sobic005G044800 Sobic001G123000 Sobic001G123000 Sobic003G344900--Sobic001G123000 Sobic003G344900--Sobic001G047400 Sobic001G181700 Sobic001G181700 Sobic003G344900--Sobic001G181700 Sobic001G051200 Sobic001G051200 Sobic003G344900--Sobic001G051200 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic001G199100--Sobic009G075800 Sobic009G207000 Sobic009G207000 Sobic001G199100--Sobic009G207000 Sobic008G093000 Sobic008G093000 Sobic001G199100--Sobic008G093000 Sobic001G091300 Sobic001G091300 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic001G199100--Sobic004G348300 Sobic003G015900 Sobic003G015900 Sobic002G352600--Sobic003G015900 Sobic010G027600 Sobic010G027600 Sobic002G352600--Sobic010G027600 Sobic009G228700 Sobic009G228700 Sobic002G352600--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic002G352600--Sobic004G121100 Sobic002G352600--Sobic009G217100 Sobic001G121200 Sobic001G121200 Sobic002G352600--Sobic001G121200 Sobic002G352600--Sobic010G000900 Sobic004G066200 Sobic004G066200 Sobic002G352600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic002G352600--Sobic003G248200 Sobic006G249700--Sobic009G228700 Sobic006G249700--Sobic009G207000 Sobic006G249700--Sobic004G348300 Sobic003G312200 Sobic003G312200 Sobic006G249700--Sobic003G312200 Sobic006G249700--Sobic002G352600 Sobic006G249700--Sobic004G275700 Sobic001G323000 Sobic001G323000 Sobic006G249700--Sobic001G323000 Sobic006G148200 Sobic006G148200 Sobic006G249700--Sobic006G148200 Sobic009G138100 Sobic009G138100 Sobic006G249700--Sobic009G138100 Sobic002G132000 Sobic002G132000 Sobic004G006200--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic004G006200--Sobic004G295800 Sobic007G024700 Sobic007G024700 Sobic004G006200--Sobic007G024700 Sobic007G062600 Sobic007G062600 Sobic004G006200--Sobic007G062600 Sobic004G052900 Sobic004G052900 Sobic004G006200--Sobic004G052900 Sobic004G264400 Sobic004G264400 Sobic004G006200--Sobic004G264400 Sobic002G424000 Sobic002G424000 Sobic004G006200--Sobic002G424000 Sobic004G006200--Sobic001G199100 Sobic004G006200--Sobic003G012200 Sobic009G123600 Sobic009G123600 Sobic002G059300--Sobic009G123600 Sobic002G059300--Sobic001G121200 Sobic001G067400 Sobic001G067400 Sobic002G059300--Sobic001G067400 Sobic009G056200 Sobic009G056200 Sobic002G059300--Sobic009G056200 Sobic002G059300--Sobic004G206700 Sobic002G059300--Sobic004G348300 Sobic002G347000 Sobic002G347000 Sobic002G059300--Sobic002G347000 Sobic002G059300--Sobic010G027600 Sobic006G199200 Sobic006G199200 Sobic002G059300--Sobic006G199200 Sobic009G217100--Sobic009G259400 Sobic009G217100--Sobic010G000900 Sobic007G007000 Sobic007G007000 Sobic009G217100--Sobic007G007000 Sobic009G217100--Sobic002G352600 Sobic009G217100--Sobic002G226900 Sobic009G217100--Sobic004G006200 Sobic009G217100--Sobic004G348300 Sobic001G137100 Sobic001G137100 Sobic009G217100--Sobic001G137100 Sobic010G251000 Sobic010G251000 Sobic009G217100--Sobic010G251000 Sobic001G142100 Sobic001G142100 Sobic005G004200--Sobic001G142100 Sobic010G018700 Sobic010G018700 Sobic005G004200--Sobic010G018700 Sobic008G004400 Sobic008G004400 Sobic005G004200--Sobic008G004400 Sobic005G004200--Sobic004G348300 Sobic007G225100 Sobic007G225100 Sobic005G004200--Sobic007G225100 Sobic004G339100 Sobic004G339100 Sobic005G004200--Sobic004G339100 Sobic002G111600 Sobic002G111600 Sobic005G004200--Sobic002G111600 Sobic001G356600 Sobic001G356600 Sobic005G004200--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic005G004200--Sobic009G179700
Octagon: transcription factors


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