Gene annotation
Transcriptome id Sobic.002G226900.1
Synonym NQR, Sb02g026720
Functional annotation zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed
UniProt C5X2C6
Pfam PF08240 PF13561 PF00107
Panther DB PTHR11695 PTHR11695:SF264
NCBI CDD KOG4169; 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases
KEGG Orthology K07119; PTGR3, prostaglandin reductase 3
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G49670 : ARP protein (REF)
RAP-DB (Rice) LOC_Os09g28570.1 : zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a047268 , Zm00025a047267 , Zm00025a047280
Brachypodium PNT64730 , PNT64729 , PNT64728 , PNT64727 , KQJ90526
Barley HORVU5Hr1G068630.18 , HORVU5Hr1G068630.19 , HORVU5Hr1G068630.10 , HORVU5Hr1G068630.11 , HORVU5Hr1G068630.12 , HORVU5Hr1G068630.13 , HORVU5Hr1G068630.14 , HORVU5Hr1G068630.15 , HORVU5Hr1G068630.16 , HORVU5Hr1G068630.25 , HORVU5Hr1G068630.29 , HORVU5Hr1G068630.28 , HORVU5Hr1G068630.24 , HORVU5Hr1G068630.27 , HORVU5Hr1G068630.26 , HORVU5Hr1G068630.20 , HORVU5Hr1G068630.23 , HORVU5Hr1G068630.22 , HORVU5Hr1G068630.32 , HORVU5Hr1G068630.33 , HORVU5Hr1G068630.30 , HORVU5Hr1G068630.31 , HORVU5Hr1G068630.36 , HORVU5Hr1G068630.37 , HORVU5Hr1G068630.34 , HORVU5Hr1G068630.35 , HORVU5Hr1G068630.8 , HORVU5Hr1G068630.9 , HORVU5Hr1G068630.2 , HORVU5Hr1G068630.1 , HORVU5Hr1G068630.6 , HORVU5Hr1G068630.7 , HORVU5Hr1G068630.4 , HORVU5Hr1G068630.5
Wheat TraesCS5A02G240300 , TraesCS5D02G246800 , TraesCS5A02G240400 , TraesCS5B02G238500 , TraesCS5D02G246800 , TraesCS5B02G238400 , TraesCS5B02G238400 , TraesCS5D02G247000 , TraesCS5D02G247000
Populus -


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cDNA sequences
Sobic.002G226900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
2 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
3 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
4 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
5 Sobic.009G217100 phosphatidylinositol transfer, putative, expressed -
6 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
7 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
8 Sobic.010G000900 spotted leaf 11, putative, expressed -
9 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
10 Sobic.009G222500 expressed protein -
11 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
12 Sobic.007G098200 - -
13 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
14 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
15 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
16 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
17 Sobic.002G352600 expressed protein -
18 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
20 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15


Gene co-expression network
sample Sobic002G226900 Sobic002G226900 Sobic009G075800 Sobic009G075800 Sobic002G226900--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic002G226900--Sobic004G275700 Sobic003G012200 Sobic003G012200 Sobic002G226900--Sobic003G012200 Sobic001G199100 Sobic001G199100 Sobic002G226900--Sobic001G199100 Sobic009G217100 Sobic009G217100 Sobic002G226900--Sobic009G217100 Sobic003G365300 Sobic003G365300 Sobic002G226900--Sobic003G365300 Sobic010G251000 Sobic010G251000 Sobic002G226900--Sobic010G251000 Sobic010G000900 Sobic010G000900 Sobic002G226900--Sobic010G000900 Sobic001G203900 Sobic001G203900 Sobic002G226900--Sobic001G203900 Sobic009G222500 Sobic009G222500 Sobic009G075800--Sobic009G222500 Sobic009G075800--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic009G075800--Sobic010G020400 Sobic009G075800--Sobic001G199100 Sobic008G004600 Sobic008G004600 Sobic009G075800--Sobic008G004600 Sobic009G075800--Sobic003G012200 Sobic006G136400 Sobic006G136400 Sobic009G075800--Sobic006G136400 Sobic001G392300 Sobic001G392300 Sobic009G075800--Sobic001G392300 Sobic007G071900 Sobic007G071900 Sobic009G075800--Sobic007G071900 Sobic004G275700--Sobic001G199100 Sobic001G091300 Sobic001G091300 Sobic004G275700--Sobic001G091300 Sobic004G275700--Sobic009G075800 Sobic002G262900 Sobic002G262900 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic004G275700--Sobic003G365300 Sobic004G275700--Sobic003G012200 Sobic003G012200--Sobic001G199100 Sobic003G344900 Sobic003G344900 Sobic003G012200--Sobic003G344900 Sobic003G012200--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic003G012200--Sobic001G085100 Sobic004G348300 Sobic004G348300 Sobic003G012200--Sobic004G348300 Sobic003G012200--Sobic009G075800 Sobic003G012200--Sobic004G275700 Sobic009G259400 Sobic009G259400 Sobic003G012200--Sobic009G259400 Sobic001G047400 Sobic001G047400 Sobic003G012200--Sobic001G047400 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic001G199100--Sobic009G075800 Sobic009G207000 Sobic009G207000 Sobic001G199100--Sobic009G207000 Sobic008G093000 Sobic008G093000 Sobic001G199100--Sobic008G093000 Sobic001G199100--Sobic001G091300 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic001G199100--Sobic004G348300 Sobic009G217100--Sobic009G259400 Sobic009G217100--Sobic010G000900 Sobic007G007000 Sobic007G007000 Sobic009G217100--Sobic007G007000 Sobic002G352600 Sobic002G352600 Sobic009G217100--Sobic002G352600 Sobic009G217100--Sobic002G226900 Sobic004G006200 Sobic004G006200 Sobic009G217100--Sobic004G006200 Sobic009G217100--Sobic004G348300 Sobic001G137100 Sobic001G137100 Sobic009G217100--Sobic001G137100 Sobic009G217100--Sobic010G251000 Sobic001G390800 Sobic001G390800 Sobic003G365300--Sobic001G390800 Sobic006G002000 Sobic006G002000 Sobic003G365300--Sobic006G002000 Sobic006G082400 Sobic006G082400 Sobic003G365300--Sobic006G082400 Sobic003G365300--Sobic004G275700 Sobic002G111000 Sobic002G111000 Sobic003G365300--Sobic002G111000 Sobic003G365300--Sobic001G203900 Sobic009G068500 Sobic009G068500 Sobic003G365300--Sobic009G068500 Sobic003G006300 Sobic003G006300 Sobic003G365300--Sobic003G006300 Sobic001G107600 Sobic001G107600 Sobic003G365300--Sobic001G107600 Sobic010G251000--Sobic001G007000 Sobic001G080700 Sobic001G080700 Sobic010G251000--Sobic001G080700 Sobic006G200600 Sobic006G200600 Sobic010G251000--Sobic006G200600 Sobic004G066200 Sobic004G066200 Sobic010G251000--Sobic004G066200 Sobic004G121100 Sobic004G121100 Sobic010G251000--Sobic004G121100 Sobic010G251000--Sobic001G392300 Sobic010G251000--Sobic001G047400 Sobic004G353200 Sobic004G353200 Sobic010G251000--Sobic004G353200 Sobic008G046500 Sobic008G046500 Sobic010G251000--Sobic008G046500 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic001G203900--Sobic003G365300 Sobic010G131900 Sobic010G131900 Sobic001G203900--Sobic010G131900 Sobic001G203900--Sobic002G226900 Sobic001G203900--Sobic001G199100 Sobic001G203900--Sobic008G093000 Sobic001G203900--Sobic003G012200 Sobic001G203900--Sobic003G006300 Sobic001G203900--Sobic004G275700 Sobic001G203900--Sobic009G068500
Octagon: transcription factors


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