Gene annotation
Transcriptome id Sobic.003G316700.1,Sobic.003G316700.2
Synonym Sb03g036400
Functional annotation katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
UniProt A0A1W0VZU9 , A0A1W0VZX0
Pfam PF00400 PF13925 PF13925 PF00400
Panther DB PTHR19845 PTHR19845:SF8
NCBI CDD KOG0267; Microtubule severing protein katanin p80 subunit B (contains WD40 repeats)
KEGG Orthology K18643; katanin p80 WD40 repeat-containing subunit B1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G61210 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g57210.1 : katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
MaizeGDB (Corn) Zm00025a039889
Brachypodium KQK10071 , KQK10070
Barley HORVU3Hr1G076760.20 , HORVU3Hr1G076760.21 , HORVU3Hr1G076760.19 , HORVU3Hr1G076760.18 , HORVU3Hr1G076760.11 , HORVU3Hr1G076760.10 , HORVU3Hr1G076760.13 , HORVU3Hr1G076760.12 , HORVU3Hr1G076760.15 , HORVU3Hr1G076760.14 , HORVU3Hr1G076760.17 , HORVU3Hr1G076760.16 , HORVU3Hr1G076760.9 , HORVU3Hr1G076760.8 , HORVU3Hr1G076760.5 , HORVU3Hr1G076760.4 , HORVU3Hr1G076760.7 , HORVU3Hr1G076760.6 , HORVU3Hr1G076760.1 , HORVU3Hr1G076760.3 , HORVU3Hr1G076760.2
Wheat TraesCS3A02G317500 , TraesCS3A02G317500 , TraesCS3D02G313800 , TraesCS3D02G313800 , TraesCS3B02G349000 , TraesCS3B02G349000 , TraesCS3B02G349000 , TraesCS3B02G349000
Populus PNT11798


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cDNA sequences
Sobic.003G316700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G386300 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
3 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
4 Sobic.002G358400 eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
5 Sobic.001G332500 WRKY81, expressed -
6 Sobic.002G257200 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
7 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
8 Sobic.004G203400 repressor of RNA polymerase III transcription MAF1, putative, expressed -
9 Sobic.009G200800 protein kinase domain containing protein, expressed -
10 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
11 Sobic.003G253600 protein kinase domain containing protein, expressed -
12 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
13 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
14 Sobic.003G113800 CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
K00924: kinase
15 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
16 Sobic.009G229200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
17 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
18 Sobic.004G115350 - K12843: PRPF3, U4/U6 small nuclear ribonucleoprotein PRP3
19 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
20 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5


Gene co-expression network
sample Sobic003G316700 Sobic003G316700 Sobic001G386300 Sobic001G386300 Sobic003G316700--Sobic001G386300 Sobic001G425800 Sobic001G425800 Sobic003G316700--Sobic001G425800 Sobic001G031100 Sobic001G031100 Sobic003G316700--Sobic001G031100 Sobic002G358400 Sobic002G358400 Sobic003G316700--Sobic002G358400 Sobic001G332500 Sobic001G332500 Sobic003G316700--Sobic001G332500 Sobic002G257200 Sobic002G257200 Sobic003G316700--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic003G316700--Sobic004G146800 Sobic004G203400 Sobic004G203400 Sobic003G316700--Sobic004G203400 Sobic009G200800 Sobic009G200800 Sobic003G316700--Sobic009G200800 Sobic002G054300 Sobic002G054300 Sobic001G386300--Sobic002G054300 Sobic003G121300 Sobic003G121300 Sobic001G386300--Sobic003G121300 Sobic004G210800 Sobic004G210800 Sobic001G386300--Sobic004G210800 Sobic001G080700 Sobic001G080700 Sobic001G386300--Sobic001G080700 Sobic001G386300--Sobic001G031100 Sobic001G386300--Sobic001G332500 Sobic001G386300--Sobic003G316700 Sobic010G029900 Sobic010G029900 Sobic001G386300--Sobic010G029900 Sobic002G126500 Sobic002G126500 Sobic001G386300--Sobic002G126500 Sobic002G134600 Sobic002G134600 Sobic001G425800--Sobic002G134600 Sobic010G223700 Sobic010G223700 Sobic001G425800--Sobic010G223700 Sobic007G006900 Sobic007G006900 Sobic001G425800--Sobic007G006900 Sobic008G046500 Sobic008G046500 Sobic001G425800--Sobic008G046500 Sobic010G249100 Sobic010G249100 Sobic001G425800--Sobic010G249100 Sobic001G226700 Sobic001G226700 Sobic001G425800--Sobic001G226700 Sobic001G425800--Sobic002G257200 Sobic001G425800--Sobic004G146800 Sobic008G124900 Sobic008G124900 Sobic001G425800--Sobic008G124900 Sobic009G192000 Sobic009G192000 Sobic001G031100--Sobic009G192000 Sobic003G264200 Sobic003G264200 Sobic001G031100--Sobic003G264200 Sobic001G007000 Sobic001G007000 Sobic001G031100--Sobic001G007000 Sobic004G054100 Sobic004G054100 Sobic001G031100--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic001G031100--Sobic002G047700 Sobic009G222500 Sobic009G222500 Sobic001G031100--Sobic009G222500 Sobic001G031100--Sobic001G080700 Sobic009G068500 Sobic009G068500 Sobic001G031100--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G031100--Sobic010G251000 Sobic002G358400--Sobic002G047700 Sobic002G358400--Sobic001G031100 Sobic002G358400--Sobic009G192000 Sobic001G019800 Sobic001G019800 Sobic002G358400--Sobic001G019800 Sobic003G373500 Sobic003G373500 Sobic002G358400--Sobic003G373500 Sobic002G358400--Sobic003G264200 Sobic001G406100 Sobic001G406100 Sobic002G358400--Sobic001G406100 Sobic003G354600 Sobic003G354600 Sobic002G358400--Sobic003G354600 Sobic004G070700 Sobic004G070700 Sobic002G358400--Sobic004G070700 Sobic001G332500--Sobic001G080700 Sobic001G122832 Sobic001G122832 Sobic001G332500--Sobic001G122832 Sobic003G253600 Sobic003G253600 Sobic001G332500--Sobic003G253600 Sobic001G375700 Sobic001G375700 Sobic001G332500--Sobic001G375700 Sobic001G392300 Sobic001G392300 Sobic001G332500--Sobic001G392300 Sobic003G221900 Sobic003G221900 Sobic001G332500--Sobic003G221900 Sobic007G136800 Sobic007G136800 Sobic001G332500--Sobic007G136800 Sobic003G398700 Sobic003G398700 Sobic001G332500--Sobic003G398700 Sobic006G185100 Sobic006G185100 Sobic001G332500--Sobic006G185100 Sobic002G257200--Sobic001G425800 Sobic005G158300 Sobic005G158300 Sobic002G257200--Sobic005G158300 Sobic004G226600 Sobic004G226600 Sobic002G257200--Sobic004G226600 Sobic002G257200--Sobic003G316700 Sobic010G009800 Sobic010G009800 Sobic002G257200--Sobic010G009800 Sobic004G316700 Sobic004G316700 Sobic002G257200--Sobic004G316700 Sobic004G325600 Sobic004G325600 Sobic002G257200--Sobic004G325600 Sobic004G286500 Sobic004G286500 Sobic002G257200--Sobic004G286500 Sobic003G273500 Sobic003G273500 Sobic002G257200--Sobic003G273500 Sobic001G421900 Sobic001G421900 Sobic004G146800--Sobic001G421900 Sobic004G146800--Sobic001G425800 Sobic001G358000 Sobic001G358000 Sobic004G146800--Sobic001G358000 Sobic001G472600 Sobic001G472600 Sobic004G146800--Sobic001G472600 Sobic005G026100 Sobic005G026100 Sobic004G146800--Sobic005G026100 Sobic004G146800--Sobic010G249100 Sobic009G165800 Sobic009G165800 Sobic004G146800--Sobic009G165800 Sobic007G019800 Sobic007G019800 Sobic004G146800--Sobic007G019800 Sobic006G209400 Sobic006G209400 Sobic004G146800--Sobic006G209400 Sobic009G229200 Sobic009G229200 Sobic004G203400--Sobic009G229200 Sobic010G042100 Sobic010G042100 Sobic004G203400--Sobic010G042100 Sobic001G388200 Sobic001G388200 Sobic004G203400--Sobic001G388200 Sobic002G134001 Sobic002G134001 Sobic004G203400--Sobic002G134001 Sobic004G203400--Sobic009G165800 Sobic003G117900 Sobic003G117900 Sobic004G203400--Sobic003G117900 Sobic001G314500 Sobic001G314500 Sobic004G203400--Sobic001G314500 Sobic010G083700 Sobic010G083700 Sobic004G203400--Sobic010G083700 Sobic006G232200 Sobic006G232200 Sobic004G203400--Sobic006G232200 Sobic008G152600 Sobic008G152600 Sobic009G200800--Sobic008G152600 Sobic010G251300 Sobic010G251300 Sobic009G200800--Sobic010G251300 Sobic003G309200 Sobic003G309200 Sobic009G200800--Sobic003G309200 Sobic009G200800--Sobic008G124900 Sobic009G231200 Sobic009G231200 Sobic009G200800--Sobic009G231200 Sobic001G333600 Sobic001G333600 Sobic009G200800--Sobic001G333600 Sobic009G180500 Sobic009G180500 Sobic009G200800--Sobic009G180500 Sobic008G047400 Sobic008G047400 Sobic009G200800--Sobic008G047400 Sobic009G200800--Sobic010G249100
Octagon: transcription factors


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