Gene annotation
Transcriptome id Sobic.004G115350.2,Sobic.004G115350.1
Synonym -
Functional annotation -
UniProt A0A1Z5RLV9
Pfam PF06544 PF08572
Panther DB PTHR14212
NCBI CDD KOG2769; Putative u4/u6 small nuclear ribonucleoprotein
KEGG Orthology K12843; PRPF3, U4/U6 small nuclear ribonucleoprotein PRP3
Gene Ontology GO:0000398; mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT1G28060 : Pre-mRNA-splicing factor 3
RAP-DB (Rice) LOC_Os09g07500.1 : expressed protein
MaizeGDB (Corn) Zm00025a019918 , Zm00025a034410
Brachypodium PNT65801 , PNT65800
Barley HORVU5Hr1G051300.7 , HORVU5Hr1G051300.4 , HORVU5Hr1G051300.5 , HORVU5Hr1G051300.2 , HORVU5Hr1G051300.3 , HORVU5Hr1G051300.1 , HORVU5Hr1G051300.8 , HORVU5Hr1G051300.6
Wheat TraesCS7A02G082700 , TraesCS5B02G165100 , TraesCS5B02G165100 , TraesCS7A02G082700 , TraesCS5D02G172500 , TraesCS4A02G380600 , TraesCS5A02G168300 , TraesCS5B02G165100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
2 Sobic.006G049700 SAM domain family protein, expressed -
3 Sobic.009G222500 expressed protein -
4 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
5 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
6 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -
7 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
8 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
9 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
10 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
11 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
12 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
13 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
14 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
15 Sobic.004G226800 expressed protein -
16 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
17 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
18 Sobic.002G113900 lipid binding protein, putative, expressed -
19 Sobic.007G093800 expressed protein -
20 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2


Gene co-expression network
sample Sobic004G115350 Sobic004G115350 Sobic004G356900 Sobic004G356900 Sobic004G115350--Sobic004G356900 Sobic006G049700 Sobic006G049700 Sobic004G115350--Sobic006G049700 Sobic009G222500 Sobic009G222500 Sobic004G115350--Sobic009G222500 Sobic004G202500 Sobic004G202500 Sobic004G115350--Sobic004G202500 Sobic006G101700 Sobic006G101700 Sobic004G115350--Sobic006G101700 Sobic003G099100 Sobic003G099100 Sobic004G115350--Sobic003G099100 Sobic003G349300 Sobic003G349300 Sobic004G115350--Sobic003G349300 Sobic008G153500 Sobic008G153500 Sobic004G115350--Sobic008G153500 Sobic010G209000 Sobic010G209000 Sobic004G115350--Sobic010G209000 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic006G049700--Sobic009G222500 Sobic007G166400 Sobic007G166400 Sobic006G049700--Sobic007G166400 Sobic003G264200 Sobic003G264200 Sobic006G049700--Sobic003G264200 Sobic006G049700--Sobic006G101700 Sobic007G167900 Sobic007G167900 Sobic006G049700--Sobic007G167900 Sobic006G049700--Sobic004G226800 Sobic010G027600 Sobic010G027600 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic006G049700--Sobic004G356900 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic009G222500--Sobic006G049700 Sobic001G080700 Sobic001G080700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic004G066200 Sobic004G066200 Sobic009G222500--Sobic004G066200 Sobic009G222500--Sobic007G166400 Sobic009G222500--Sobic010G027600 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic004G202500--Sobic004G066200 Sobic010G278200 Sobic010G278200 Sobic004G202500--Sobic010G278200 Sobic004G202500--Sobic003G099100 Sobic008G124900 Sobic008G124900 Sobic004G202500--Sobic008G124900 Sobic001G193300 Sobic001G193300 Sobic004G202500--Sobic001G193300 Sobic004G202500--Sobic006G101700 Sobic001G007000 Sobic001G007000 Sobic004G202500--Sobic001G007000 Sobic007G093800 Sobic007G093800 Sobic004G202500--Sobic007G093800 Sobic010G130000 Sobic010G130000 Sobic004G202500--Sobic010G130000 Sobic006G101700--Sobic004G066200 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic006G101700--Sobic001G080700 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic009G123600 Sobic009G123600 Sobic003G099100--Sobic009G123600 Sobic002G385900 Sobic002G385900 Sobic003G099100--Sobic002G385900 Sobic003G099100--Sobic004G202500 Sobic003G099100--Sobic009G222500 Sobic003G099100--Sobic010G027600 Sobic009G135600 Sobic009G135600 Sobic003G099100--Sobic009G135600 Sobic003G099100--Sobic006G049700 Sobic003G099100--Sobic010G278200 Sobic003G099100--Sobic004G115350 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic004G181900 Sobic004G181900 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic001G283200 Sobic001G283200 Sobic003G349300--Sobic001G283200 Sobic003G261400 Sobic003G261400 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600 Sobic008G153500--Sobic007G166400 Sobic008G153500--Sobic006G049700 Sobic002G361400 Sobic002G361400 Sobic008G153500--Sobic002G361400 Sobic006G010000 Sobic006G010000 Sobic008G153500--Sobic006G010000 Sobic008G153500--Sobic006G101700 Sobic009G095100 Sobic009G095100 Sobic008G153500--Sobic009G095100 Sobic009G179700 Sobic009G179700 Sobic008G153500--Sobic009G179700 Sobic008G153500--Sobic009G222500 Sobic008G153500--Sobic004G115350 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic010G209000--Sobic006G101700 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic006G017000 Sobic006G017000 Sobic010G209000--Sobic006G017000 Sobic010G209000--Sobic007G166400 Sobic008G050800 Sobic008G050800 Sobic010G209000--Sobic008G050800 Sobic001G360200 Sobic001G360200 Sobic010G209000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic010G209000--Sobic001G392300
Octagon: transcription factors


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