Gene annotation
Transcriptome id Sobic.001G406100.1
Synonym Sb01g038400
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
mitochondrial carrier protein, putative, expressed
UniProt C5WNI5
Pfam PF00153
Panther DB PTHR24089 PTHR24089:SF396
NCBI CDD KOG0756; Mitochondrial tricarboxylate/dicarboxylate carrier proteins
KEGG Orthology K15100; SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G01340 : Mitochondrial substrate carrier family protein
RAP-DB (Rice) LOC_Os03g18160.1 : mitochondrial carrier protein, putative, expressed
MaizeGDB (Corn) Zm00025a001994
Brachypodium KQK22158
Barley -
Wheat TraesCS4B02G193900 , TraesCS4A02G110200 , TraesCS4D02G194800
Populus -


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cDNA sequences
Sobic.001G406100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
2 Sobic.010G074300 smr domain containing protein, expressed -
3 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
4 Sobic.002G358400 eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
5 Sobic.004G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
6 Sobic.008G187100 early-responsive to dehydration protein-related, putative, expressed -
7 Sobic.004G070700 GA16396-PA, putative, expressed -
8 Sobic.002G204200 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
9 Sobic.009G207300 ubiquitin domain-containing protein 1, putative, expressed -
10 Sobic.003G354600 csAtPR5, putative, expressed -
11 Sobic.001G082000 zinc finger family protein, putative, expressed K06874: zinc finger protein
12 Sobic.010G027000 enolase, putative, expressed K01689: ENO, enolase
13 Sobic.009G190700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
14 Sobic.002G358800 interferon-related developmental regulator, putative, expressed -
15 Sobic.003G350800 SLT1 protein, putative, expressed -
16 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
17 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
18 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
20 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin


Gene co-expression network
sample Sobic001G406100 Sobic001G406100 Sobic001G070000 Sobic001G070000 Sobic001G406100--Sobic001G070000 Sobic010G074300 Sobic010G074300 Sobic001G406100--Sobic010G074300 Sobic008G047400 Sobic008G047400 Sobic001G406100--Sobic008G047400 Sobic002G358400 Sobic002G358400 Sobic001G406100--Sobic002G358400 Sobic004G103000 Sobic004G103000 Sobic001G406100--Sobic004G103000 Sobic008G187100 Sobic008G187100 Sobic001G406100--Sobic008G187100 Sobic004G070700 Sobic004G070700 Sobic001G406100--Sobic004G070700 Sobic002G204200 Sobic002G204200 Sobic001G406100--Sobic002G204200 Sobic009G207300 Sobic009G207300 Sobic001G406100--Sobic009G207300 Sobic001G070000--Sobic001G406100 Sobic010G116400 Sobic010G116400 Sobic001G070000--Sobic010G116400 Sobic001G070000--Sobic008G047400 Sobic006G090500 Sobic006G090500 Sobic001G070000--Sobic006G090500 Sobic003G243600 Sobic003G243600 Sobic001G070000--Sobic003G243600 Sobic008G059100 Sobic008G059100 Sobic001G070000--Sobic008G059100 Sobic003G403700 Sobic003G403700 Sobic001G070000--Sobic003G403700 Sobic001G185500 Sobic001G185500 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic010G147100 Sobic010G147100 Sobic010G074300--Sobic010G147100 Sobic004G118200 Sobic004G118200 Sobic010G074300--Sobic004G118200 Sobic007G190000 Sobic007G190000 Sobic010G074300--Sobic007G190000 Sobic001G080700 Sobic001G080700 Sobic010G074300--Sobic001G080700 Sobic002G311100 Sobic002G311100 Sobic010G074300--Sobic002G311100 Sobic010G131900 Sobic010G131900 Sobic010G074300--Sobic010G131900 Sobic009G074400 Sobic009G074400 Sobic010G074300--Sobic009G074400 Sobic003G316500 Sobic003G316500 Sobic010G074300--Sobic003G316500 Sobic001G268200 Sobic001G268200 Sobic010G074300--Sobic001G268200 Sobic008G124900 Sobic008G124900 Sobic008G047400--Sobic008G124900 Sobic010G278200 Sobic010G278200 Sobic008G047400--Sobic010G278200 Sobic006G033200 Sobic006G033200 Sobic008G047400--Sobic006G033200 Sobic004G202500 Sobic004G202500 Sobic008G047400--Sobic004G202500 Sobic003G302900 Sobic003G302900 Sobic008G047400--Sobic003G302900 Sobic008G047400--Sobic010G074300 Sobic004G255700 Sobic004G255700 Sobic008G047400--Sobic004G255700 Sobic008G047400--Sobic010G147100 Sobic003G309200 Sobic003G309200 Sobic008G047400--Sobic003G309200 Sobic002G047700 Sobic002G047700 Sobic002G358400--Sobic002G047700 Sobic001G031100 Sobic001G031100 Sobic002G358400--Sobic001G031100 Sobic009G192000 Sobic009G192000 Sobic002G358400--Sobic009G192000 Sobic001G019800 Sobic001G019800 Sobic002G358400--Sobic001G019800 Sobic003G373500 Sobic003G373500 Sobic002G358400--Sobic003G373500 Sobic003G264200 Sobic003G264200 Sobic002G358400--Sobic003G264200 Sobic002G358400--Sobic001G406100 Sobic003G354600 Sobic003G354600 Sobic002G358400--Sobic003G354600 Sobic002G358400--Sobic004G070700 Sobic001G243200 Sobic001G243200 Sobic004G103000--Sobic001G243200 Sobic006G259600 Sobic006G259600 Sobic004G103000--Sobic006G259600 Sobic008G167600 Sobic008G167600 Sobic004G103000--Sobic008G167600 Sobic001G352400 Sobic001G352400 Sobic004G103000--Sobic001G352400 Sobic004G103000--Sobic001G476700 Sobic004G169000 Sobic004G169000 Sobic004G103000--Sobic004G169000 Sobic004G103000--Sobic010G074300 Sobic001G333800 Sobic001G333800 Sobic004G103000--Sobic001G333800 Sobic005G106600 Sobic005G106600 Sobic004G103000--Sobic005G106600 Sobic003G381700 Sobic003G381700 Sobic008G187100--Sobic003G381700 Sobic003G186900 Sobic003G186900 Sobic008G187100--Sobic003G186900 Sobic003G339700 Sobic003G339700 Sobic008G187100--Sobic003G339700 Sobic008G187100--Sobic005G106600 Sobic001G057700 Sobic001G057700 Sobic008G187100--Sobic001G057700 Sobic008G187100--Sobic001G352400 Sobic003G166200 Sobic003G166200 Sobic008G187100--Sobic003G166200 Sobic004G322700 Sobic004G322700 Sobic008G187100--Sobic004G322700 Sobic007G146400 Sobic007G146400 Sobic008G187100--Sobic007G146400 Sobic004G070700--Sobic003G354600 Sobic001G193300 Sobic001G193300 Sobic004G070700--Sobic001G193300 Sobic007G171400 Sobic007G171400 Sobic004G070700--Sobic007G171400 Sobic008G168300 Sobic008G168300 Sobic004G070700--Sobic008G168300 Sobic006G185100 Sobic006G185100 Sobic004G070700--Sobic006G185100 Sobic002G111200 Sobic002G111200 Sobic004G070700--Sobic002G111200 Sobic002G325300 Sobic002G325300 Sobic004G070700--Sobic002G325300 Sobic002G091600 Sobic002G091600 Sobic004G070700--Sobic002G091600 Sobic003G176000 Sobic003G176000 Sobic004G070700--Sobic003G176000 Sobic008G089900 Sobic008G089900 Sobic002G204200--Sobic008G089900 Sobic007G216100 Sobic007G216100 Sobic002G204200--Sobic007G216100 Sobic004G017800 Sobic004G017800 Sobic002G204200--Sobic004G017800 Sobic002G226400 Sobic002G226400 Sobic002G204200--Sobic002G226400 Sobic002G204200--Sobic001G406100 Sobic010G230500 Sobic010G230500 Sobic002G204200--Sobic010G230500 Sobic002G204200--Sobic001G070000 Sobic002G204200--Sobic004G103000 Sobic003G295900 Sobic003G295900 Sobic002G204200--Sobic003G295900 Sobic009G207300--Sobic008G089900 Sobic002G128900 Sobic002G128900 Sobic009G207300--Sobic002G128900 Sobic005G062700 Sobic005G062700 Sobic009G207300--Sobic005G062700 Sobic007G079400 Sobic007G079400 Sobic009G207300--Sobic007G079400 Sobic009G162600 Sobic009G162600 Sobic009G207300--Sobic009G162600 Sobic009G207300--Sobic008G187100 Sobic001G303200 Sobic001G303200 Sobic009G207300--Sobic001G303200 Sobic003G373600 Sobic003G373600 Sobic009G207300--Sobic003G373600 Sobic009G207300--Sobic004G070700
Octagon: transcription factors


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