Gene annotation
Transcriptome id Sobic.002G204200.1
Synonym RUB1, NEDD8, Sb02g024880, ATRUB1
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5XCV9
Pfam PF11976 PF00240
Panther DB PTHR10666
NCBI CDD KOG0005; Ubiquitin-like protein
KEGG Orthology K12158; ubiquitin-like protein Nedd8
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G31340 : related to ubiquitin 1
RAP-DB (Rice) LOC_Os09g25320.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a036147 , Zm00025a039850 , Zm00025a047018 , Zm00025a013490
Brachypodium KQJ93465 , KQK17173 , KQK04204 , PNT77709 , PNT77708 , KQJ90267 , KQK07353 , KQJ93464 , KQK16153 , PNT65948
Barley HORVU6Hr1G026280.4 , HORVU6Hr1G026280.3 , HORVU7Hr1G113500.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU3Hr1G014180.1 , HORVU1Hr1G087690.10 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.4 , HORVU3Hr1G014150.5 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU1Hr1G087690.14 , HORVU6Hr1G016150.5 , HORVU6Hr1G016150.1 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU7Hr1G029100.1 , HORVU7Hr1G029100.2 , HORVU7Hr1G029150.2 , HORVU6Hr1G026280.16 , HORVU7Hr1G029150.1 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.15 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.4 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2 , HORVU5Hr1G065170.2 , HORVU5Hr1G065170.3 , HORVU5Hr1G065170.1 , HORVU7Hr1G029150.3 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11
Wheat TraesCS5A02G224000 , TraesCS6A02G136700 , TraesCS6B02G148000 , TraesCS2A02G408500 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS7B02G390900 , TraesCS6A02G148100 , TraesCSU02G018500 , TraesCS5D02G231400 , TraesCS4A02G086400 , TraesCS4D02G218400 , TraesCS1B02G241200 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS4D02G218300 , TraesCS5B02G222800 , TraesCS7B02G413800 , TraesCS6D02G137400 , TraesCS6A02G112400 , TraesCS1A02G227100 , TraesCS4A02G086300 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS4B02G218000 , TraesCS6B02G176400 , TraesCS7A02G487500 , TraesCS1D02G228700
Populus PNT39174 , PNT39175 , PNT39172 , PNT39170 , PNT39171 , PNT11513 , PNT39173 , PNS99724 , PNS99723 , PNS95081 , PNS95082 , PNS95078 , PNS95079 , PNS95075 , PNS95076 , PNS95077 , PNT09093 , PNT31365


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cDNA sequences
Sobic.002G204200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
2 Sobic.007G216100 expressed protein -
3 Sobic.004G017800 ubiquitin-conjugating enzyme 28(PubMedID : 26465154)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
4 Sobic.002G226400 EF hand family protein, putative, expressed -
5 Sobic.001G406100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15100: SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
6 Sobic.010G230500 expressed protein -
7 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
8 Sobic.004G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
9 Sobic.003G295900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
10 Sobic.010G027000 enolase, putative, expressed K01689: ENO, enolase
11 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
12 Sobic.006G090000 DUF1771 domain containing protein, putative, expressed -
13 Sobic.001G412800 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.009G129800 endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed -
15 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
16 Sobic.001G476700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
18 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
19 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
20 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other


Gene co-expression network
sample Sobic002G204200 Sobic002G204200 Sobic008G089900 Sobic008G089900 Sobic002G204200--Sobic008G089900 Sobic007G216100 Sobic007G216100 Sobic002G204200--Sobic007G216100 Sobic004G017800 Sobic004G017800 Sobic002G204200--Sobic004G017800 Sobic002G226400 Sobic002G226400 Sobic002G204200--Sobic002G226400 Sobic001G406100 Sobic001G406100 Sobic002G204200--Sobic001G406100 Sobic010G230500 Sobic010G230500 Sobic002G204200--Sobic010G230500 Sobic001G070000 Sobic001G070000 Sobic002G204200--Sobic001G070000 Sobic004G103000 Sobic004G103000 Sobic002G204200--Sobic004G103000 Sobic003G295900 Sobic003G295900 Sobic002G204200--Sobic003G295900 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic009G162600 Sobic009G162600 Sobic008G089900--Sobic009G162600 Sobic008G089900--Sobic004G103000 Sobic008G089900--Sobic002G204200 Sobic002G001000 Sobic002G001000 Sobic008G089900--Sobic002G001000 Sobic001G414500 Sobic001G414500 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic009G187400 Sobic009G187400 Sobic008G089900--Sobic009G187400 Sobic009G207300 Sobic009G207300 Sobic008G089900--Sobic009G207300 Sobic010G000900 Sobic010G000900 Sobic007G216100--Sobic010G000900 Sobic002G247500 Sobic002G247500 Sobic007G216100--Sobic002G247500 Sobic003G117900 Sobic003G117900 Sobic007G216100--Sobic003G117900 Sobic007G216100--Sobic003G295900 Sobic001G106700 Sobic001G106700 Sobic007G216100--Sobic001G106700 Sobic004G167400 Sobic004G167400 Sobic007G216100--Sobic004G167400 Sobic001G388200 Sobic001G388200 Sobic007G216100--Sobic001G388200 Sobic002G375300 Sobic002G375300 Sobic007G216100--Sobic002G375300 Sobic003G370900 Sobic003G370900 Sobic007G216100--Sobic003G370900 Sobic003G442900 Sobic003G442900 Sobic004G017800--Sobic003G442900 Sobic004G209900 Sobic004G209900 Sobic004G017800--Sobic004G209900 Sobic004G017800--Sobic002G204200 Sobic004G017800--Sobic003G117900 Sobic010G185500 Sobic010G185500 Sobic004G017800--Sobic010G185500 Sobic010G042100 Sobic010G042100 Sobic004G017800--Sobic010G042100 Sobic004G017800--Sobic007G216100 Sobic001G220400 Sobic001G220400 Sobic004G017800--Sobic001G220400 Sobic002G199900 Sobic002G199900 Sobic004G017800--Sobic002G199900 Sobic006G097200 Sobic006G097200 Sobic002G226400--Sobic006G097200 Sobic004G133400 Sobic004G133400 Sobic002G226400--Sobic004G133400 Sobic002G226400--Sobic002G204200 Sobic002G226400--Sobic008G089900 Sobic001G020100 Sobic001G020100 Sobic002G226400--Sobic001G020100 Sobic010G023700 Sobic010G023700 Sobic002G226400--Sobic010G023700 Sobic004G275000 Sobic004G275000 Sobic002G226400--Sobic004G275000 Sobic010G135600 Sobic010G135600 Sobic002G226400--Sobic010G135600 Sobic005G172400 Sobic005G172400 Sobic002G226400--Sobic005G172400 Sobic001G406100--Sobic001G070000 Sobic010G074300 Sobic010G074300 Sobic001G406100--Sobic010G074300 Sobic008G047400 Sobic008G047400 Sobic001G406100--Sobic008G047400 Sobic002G358400 Sobic002G358400 Sobic001G406100--Sobic002G358400 Sobic001G406100--Sobic004G103000 Sobic008G187100 Sobic008G187100 Sobic001G406100--Sobic008G187100 Sobic004G070700 Sobic004G070700 Sobic001G406100--Sobic004G070700 Sobic001G406100--Sobic002G204200 Sobic001G406100--Sobic009G207300 Sobic010G230500--Sobic010G074300 Sobic010G230500--Sobic003G295900 Sobic004G189200 Sobic004G189200 Sobic010G230500--Sobic004G189200 Sobic010G230500--Sobic008G089900 Sobic010G230500--Sobic004G103000 Sobic002G358800 Sobic002G358800 Sobic010G230500--Sobic002G358800 Sobic008G077500 Sobic008G077500 Sobic010G230500--Sobic008G077500 Sobic007G090900 Sobic007G090900 Sobic010G230500--Sobic007G090900 Sobic002G290400 Sobic002G290400 Sobic010G230500--Sobic002G290400 Sobic001G070000--Sobic001G406100 Sobic010G116400 Sobic010G116400 Sobic001G070000--Sobic010G116400 Sobic001G070000--Sobic008G047400 Sobic006G090500 Sobic006G090500 Sobic001G070000--Sobic006G090500 Sobic003G243600 Sobic003G243600 Sobic001G070000--Sobic003G243600 Sobic008G059100 Sobic008G059100 Sobic001G070000--Sobic008G059100 Sobic003G403700 Sobic003G403700 Sobic001G070000--Sobic003G403700 Sobic001G185500 Sobic001G185500 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic004G103000--Sobic001G243200 Sobic006G259600 Sobic006G259600 Sobic004G103000--Sobic006G259600 Sobic008G167600 Sobic008G167600 Sobic004G103000--Sobic008G167600 Sobic001G352400 Sobic001G352400 Sobic004G103000--Sobic001G352400 Sobic004G103000--Sobic001G476700 Sobic004G169000 Sobic004G169000 Sobic004G103000--Sobic004G169000 Sobic004G103000--Sobic010G074300 Sobic001G333800 Sobic001G333800 Sobic004G103000--Sobic001G333800 Sobic005G106600 Sobic005G106600 Sobic004G103000--Sobic005G106600 Sobic006G209400 Sobic006G209400 Sobic003G295900--Sobic006G209400 Sobic003G295900--Sobic002G375300 Sobic003G295900--Sobic007G216100 Sobic003G295900--Sobic010G230500 Sobic003G099100 Sobic003G099100 Sobic003G295900--Sobic003G099100 Sobic003G295900--Sobic002G290400 Sobic002G045300 Sobic002G045300 Sobic003G295900--Sobic002G045300 Sobic003G416400 Sobic003G416400 Sobic003G295900--Sobic003G416400 Sobic001G031600 Sobic001G031600 Sobic003G295900--Sobic001G031600
Octagon: transcription factors


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