Gene annotation
Transcriptome id Sobic.009G129800.1
Synonym Sb09g019630
Functional annotation endo-1,3
1,4-beta-D-glucanase precursor, putative, expressed
UniProt C5YXM1
Pfam PF12695
Panther DB PTHR17630 PTHR17630:SF53
NCBI CDD KOG3043; Predicted hydrolase related to dienelactone hydrolase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23600 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os05g33100.1 : endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a037512 , Zm00025a037514 , Zm00025a043625
Brachypodium KQK06373 , KQK06376
Barley HORVU1Hr1G062110.1 , HORVU1Hr1G062110.4 , HORVU1Hr1G062110.7 , HORVU1Hr1G062110.2
Wheat TraesCS1B02G260500 , TraesCS1A02G249800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G129800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G292000 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
2 Sobic.009G258100 early-responsive to dehydration protein-related, putative, expressed -
3 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
4 Sobic.010G165500 ABC-2 type transporter, putative, expressed -
5 Sobic.004G057200 cytoplasmic membrane protein, putative, expressed -
6 Sobic.001G412800 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.006G261300 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
8 Sobic.002G204200 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
9 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
10 Sobic.010G071800 "s cinnamyl alcohol dehydrogenases, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
11 Sobic.008G110300 OsFBX448 - F-box domain containing protein, expressed -
12 Sobic.010G230500 expressed protein -
13 Sobic.003G373600 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
14 Sobic.007G137600 NADP-dependent malate dehydrogenase(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
15 Sobic.010G077100 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase
16 Sobic.009G180500 Myb-like DNA-binding domain containing protein, putative, expressed -
17 Sobic.005G133900 TPR repeat region family protein, expressed -
18 Sobic.002G291200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00963: UGP2, galU, UTP--glucose-1-phosphate uridylyltransferase
19 Sobic.001G143000 Phosphatase(PubMedID : 30367619)@BTBA4 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
20 Sobic.003G440300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic009G129800 Sobic009G129800 Sobic001G292000 Sobic001G292000 Sobic009G129800--Sobic001G292000 Sobic009G258100 Sobic009G258100 Sobic009G129800--Sobic009G258100 Sobic003G425300 Sobic003G425300 Sobic009G129800--Sobic003G425300 Sobic010G165500 Sobic010G165500 Sobic009G129800--Sobic010G165500 Sobic004G057200 Sobic004G057200 Sobic009G129800--Sobic004G057200 Sobic001G412800 Sobic001G412800 Sobic009G129800--Sobic001G412800 Sobic006G261300 Sobic006G261300 Sobic009G129800--Sobic006G261300 Sobic002G204200 Sobic002G204200 Sobic009G129800--Sobic002G204200 Sobic008G089900 Sobic008G089900 Sobic009G129800--Sobic008G089900 Sobic003G313900 Sobic003G313900 Sobic001G292000--Sobic003G313900 Sobic009G190600 Sobic009G190600 Sobic001G292000--Sobic009G190600 Sobic005G062700 Sobic005G062700 Sobic001G292000--Sobic005G062700 Sobic003G437800 Sobic003G437800 Sobic001G292000--Sobic003G437800 Sobic003G051000 Sobic003G051000 Sobic001G292000--Sobic003G051000 Sobic001G292000--Sobic003G425300 Sobic001G292000--Sobic008G089900 Sobic001G104900 Sobic001G104900 Sobic001G292000--Sobic001G104900 Sobic001G292000--Sobic009G129800 Sobic002G358800 Sobic002G358800 Sobic009G258100--Sobic002G358800 Sobic010G230500 Sobic010G230500 Sobic009G258100--Sobic010G230500 Sobic008G077600 Sobic008G077600 Sobic009G258100--Sobic008G077600 Sobic009G258100--Sobic003G425300 Sobic003G373600 Sobic003G373600 Sobic009G258100--Sobic003G373600 Sobic009G258100--Sobic009G129800 Sobic002G290400 Sobic002G290400 Sobic009G258100--Sobic002G290400 Sobic003G350800 Sobic003G350800 Sobic009G258100--Sobic003G350800 Sobic009G180500 Sobic009G180500 Sobic009G258100--Sobic009G180500 Sobic004G323400 Sobic004G323400 Sobic003G425300--Sobic004G323400 Sobic002G417300 Sobic002G417300 Sobic003G425300--Sobic002G417300 Sobic002G295100 Sobic002G295100 Sobic003G425300--Sobic002G295100 Sobic003G425300--Sobic003G373600 Sobic005G132000 Sobic005G132000 Sobic003G425300--Sobic005G132000 Sobic003G277400 Sobic003G277400 Sobic003G425300--Sobic003G277400 Sobic003G426900 Sobic003G426900 Sobic003G425300--Sobic003G426900 Sobic003G428600 Sobic003G428600 Sobic003G425300--Sobic003G428600 Sobic003G440300 Sobic003G440300 Sobic003G425300--Sobic003G440300 Sobic006G099700 Sobic006G099700 Sobic010G165500--Sobic006G099700 Sobic007G088000 Sobic007G088000 Sobic010G165500--Sobic007G088000 Sobic010G083500 Sobic010G083500 Sobic010G165500--Sobic010G083500 Sobic010G165500--Sobic008G077600 Sobic010G232100 Sobic010G232100 Sobic010G165500--Sobic010G232100 Sobic008G025500 Sobic008G025500 Sobic010G165500--Sobic008G025500 Sobic010G165500--Sobic009G129800 Sobic001G357300 Sobic001G357300 Sobic010G165500--Sobic001G357300 Sobic010G165500--Sobic009G180500 Sobic002G133800 Sobic002G133800 Sobic004G057200--Sobic002G133800 Sobic005G133900 Sobic005G133900 Sobic004G057200--Sobic005G133900 Sobic004G057200--Sobic001G357300 Sobic002G363100 Sobic002G363100 Sobic004G057200--Sobic002G363100 Sobic007G114200 Sobic007G114200 Sobic004G057200--Sobic007G114200 Sobic007G137600 Sobic007G137600 Sobic004G057200--Sobic007G137600 Sobic003G367451 Sobic003G367451 Sobic004G057200--Sobic003G367451 Sobic010G188100 Sobic010G188100 Sobic004G057200--Sobic010G188100 Sobic004G057200--Sobic006G261300 Sobic001G412800--Sobic003G373600 Sobic001G412800--Sobic003G425300 Sobic009G162600 Sobic009G162600 Sobic001G412800--Sobic009G162600 Sobic001G412800--Sobic005G062700 Sobic008G187100 Sobic008G187100 Sobic001G412800--Sobic008G187100 Sobic001G412800--Sobic001G292000 Sobic003G381700 Sobic003G381700 Sobic001G412800--Sobic003G381700 Sobic001G412800--Sobic008G089900 Sobic005G004500 Sobic005G004500 Sobic001G412800--Sobic005G004500 Sobic001G414500 Sobic001G414500 Sobic006G261300--Sobic001G414500 Sobic009G219900 Sobic009G219900 Sobic006G261300--Sobic009G219900 Sobic001G220400 Sobic001G220400 Sobic006G261300--Sobic001G220400 Sobic006G261300--Sobic008G089900 Sobic001G143000 Sobic001G143000 Sobic006G261300--Sobic001G143000 Sobic006G083800 Sobic006G083800 Sobic006G261300--Sobic006G083800 Sobic003G416400 Sobic003G416400 Sobic006G261300--Sobic003G416400 Sobic001G511900 Sobic001G511900 Sobic006G261300--Sobic001G511900 Sobic009G187400 Sobic009G187400 Sobic006G261300--Sobic009G187400 Sobic002G204200--Sobic008G089900 Sobic007G216100 Sobic007G216100 Sobic002G204200--Sobic007G216100 Sobic004G017800 Sobic004G017800 Sobic002G204200--Sobic004G017800 Sobic002G226400 Sobic002G226400 Sobic002G204200--Sobic002G226400 Sobic001G406100 Sobic001G406100 Sobic002G204200--Sobic001G406100 Sobic002G204200--Sobic010G230500 Sobic001G070000 Sobic001G070000 Sobic002G204200--Sobic001G070000 Sobic004G103000 Sobic004G103000 Sobic002G204200--Sobic004G103000 Sobic003G295900 Sobic003G295900 Sobic002G204200--Sobic003G295900 Sobic008G089900--Sobic006G083800 Sobic008G089900--Sobic009G162600 Sobic008G089900--Sobic004G103000 Sobic008G089900--Sobic002G204200 Sobic002G001000 Sobic002G001000 Sobic008G089900--Sobic002G001000 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic008G089900--Sobic009G187400 Sobic009G207300 Sobic009G207300 Sobic008G089900--Sobic009G207300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.