Gene annotation
Transcriptome id Sobic.007G137600.1
Synonym MDH
Functional annotation NADP-dependent malate dehydrogenase (PubMedID : 26976818)
lactate/malate dehydrogenase, putative, expressed
UniProt A0A1Z5R9Q9
Pfam PF01073 PF02866
Panther DB PTHR11540 PTHR11540:SF14
NCBI CDD -
KEGG Orthology K00026; malate dehydrogenase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT3G47520 : malate dehydrogenase
RAP-DB (Rice) LOC_Os08g33720.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a005920 , Zm00025a031157
Brachypodium KQJ98480
Barley HORVU1Hr1G081550.3 , HORVU1Hr1G081550.1 , HORVU1Hr1G081550.2
Wheat -
Populus -


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cDNA sequences
Sobic.007G137600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G057200 cytoplasmic membrane protein, putative, expressed -
2 Sobic.006G175900 acyl-CoA thioesterase 2, putative, expressed -
3 Sobic.003G373500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
4 Sobic.002G358400 eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
5 Sobic.001G357300 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
6 Sobic.010G027000 enolase, putative, expressed K01689: ENO, enolase
7 Sobic.006G178000 coiled-coil domain-containing protein 124, putative, expressed -
8 Sobic.004G121300 ATP11 protein, expressed K07555: ATPeAF1, ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
9 Sobic.001G082000 zinc finger family protein, putative, expressed K06874: zinc finger protein
10 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
11 Sobic.009G180500 Myb-like DNA-binding domain containing protein, putative, expressed -
12 Sobic.004G283700 OsFBX58 - F-box domain containing protein, expressed -
13 Sobic.002G431100 OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed K00434: L-ascorbate peroxidase
14 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
15 Sobic.004G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
16 Sobic.006G213800 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
17 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
18 Sobic.006G150400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.009G129800 endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed -
20 Sobic.005G024800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed -


Gene co-expression network
sample Sobic007G137600 Sobic007G137600 Sobic004G057200 Sobic004G057200 Sobic007G137600--Sobic004G057200 Sobic006G175900 Sobic006G175900 Sobic007G137600--Sobic006G175900 Sobic003G373500 Sobic003G373500 Sobic007G137600--Sobic003G373500 Sobic002G358400 Sobic002G358400 Sobic007G137600--Sobic002G358400 Sobic001G357300 Sobic001G357300 Sobic007G137600--Sobic001G357300 Sobic010G027000 Sobic010G027000 Sobic007G137600--Sobic010G027000 Sobic006G178000 Sobic006G178000 Sobic007G137600--Sobic006G178000 Sobic004G121300 Sobic004G121300 Sobic007G137600--Sobic004G121300 Sobic001G082000 Sobic001G082000 Sobic007G137600--Sobic001G082000 Sobic002G133800 Sobic002G133800 Sobic004G057200--Sobic002G133800 Sobic005G133900 Sobic005G133900 Sobic004G057200--Sobic005G133900 Sobic004G057200--Sobic001G357300 Sobic002G363100 Sobic002G363100 Sobic004G057200--Sobic002G363100 Sobic007G114200 Sobic007G114200 Sobic004G057200--Sobic007G114200 Sobic004G057200--Sobic007G137600 Sobic003G367451 Sobic003G367451 Sobic004G057200--Sobic003G367451 Sobic010G188100 Sobic010G188100 Sobic004G057200--Sobic010G188100 Sobic006G261300 Sobic006G261300 Sobic004G057200--Sobic006G261300 Sobic006G175900--Sobic007G137600 Sobic010G165300 Sobic010G165300 Sobic006G175900--Sobic010G165300 Sobic009G169400 Sobic009G169400 Sobic006G175900--Sobic009G169400 Sobic006G281800 Sobic006G281800 Sobic006G175900--Sobic006G281800 Sobic006G207900 Sobic006G207900 Sobic006G175900--Sobic006G207900 Sobic009G143700 Sobic009G143700 Sobic006G175900--Sobic009G143700 Sobic003G002400 Sobic003G002400 Sobic006G175900--Sobic003G002400 Sobic001G328200 Sobic001G328200 Sobic006G175900--Sobic001G328200 Sobic003G362500 Sobic003G362500 Sobic006G175900--Sobic003G362500 Sobic003G264100 Sobic003G264100 Sobic003G373500--Sobic003G264100 Sobic003G107500 Sobic003G107500 Sobic003G373500--Sobic003G107500 Sobic002G335000 Sobic002G335000 Sobic003G373500--Sobic002G335000 Sobic001G333100 Sobic001G333100 Sobic003G373500--Sobic001G333100 Sobic004G252900 Sobic004G252900 Sobic003G373500--Sobic004G252900 Sobic003G311900 Sobic003G311900 Sobic003G373500--Sobic003G311900 Sobic010G239900 Sobic010G239900 Sobic003G373500--Sobic010G239900 Sobic002G311100 Sobic002G311100 Sobic003G373500--Sobic002G311100 Sobic010G226000 Sobic010G226000 Sobic003G373500--Sobic010G226000 Sobic002G047700 Sobic002G047700 Sobic002G358400--Sobic002G047700 Sobic001G031100 Sobic001G031100 Sobic002G358400--Sobic001G031100 Sobic009G192000 Sobic009G192000 Sobic002G358400--Sobic009G192000 Sobic001G019800 Sobic001G019800 Sobic002G358400--Sobic001G019800 Sobic002G358400--Sobic003G373500 Sobic003G264200 Sobic003G264200 Sobic002G358400--Sobic003G264200 Sobic001G406100 Sobic001G406100 Sobic002G358400--Sobic001G406100 Sobic003G354600 Sobic003G354600 Sobic002G358400--Sobic003G354600 Sobic004G070700 Sobic004G070700 Sobic002G358400--Sobic004G070700 Sobic001G357300--Sobic002G363100 Sobic001G357300--Sobic005G133900 Sobic001G357300--Sobic004G057200 Sobic002G306900 Sobic002G306900 Sobic001G357300--Sobic002G306900 Sobic010G277800 Sobic010G277800 Sobic001G357300--Sobic010G277800 Sobic009G217900 Sobic009G217900 Sobic001G357300--Sobic009G217900 Sobic009G001400 Sobic009G001400 Sobic001G357300--Sobic009G001400 Sobic010G019300 Sobic010G019300 Sobic001G357300--Sobic010G019300 Sobic009G240900 Sobic009G240900 Sobic001G357300--Sobic009G240900 Sobic003G336000 Sobic003G336000 Sobic010G027000--Sobic003G336000 Sobic002G291200 Sobic002G291200 Sobic010G027000--Sobic002G291200 Sobic010G027000--Sobic010G277800 Sobic010G027000--Sobic009G217900 Sobic002G358800 Sobic002G358800 Sobic010G027000--Sobic002G358800 Sobic004G058200 Sobic004G058200 Sobic010G027000--Sobic004G058200 Sobic003G243600 Sobic003G243600 Sobic010G027000--Sobic003G243600 Sobic010G027000--Sobic001G406100 Sobic010G027000--Sobic002G358400 Sobic003G369500 Sobic003G369500 Sobic006G178000--Sobic003G369500 Sobic010G267500 Sobic010G267500 Sobic006G178000--Sobic010G267500 Sobic006G178000--Sobic007G137600 Sobic003G279200 Sobic003G279200 Sobic006G178000--Sobic003G279200 Sobic010G026925 Sobic010G026925 Sobic006G178000--Sobic010G026925 Sobic003G402600 Sobic003G402600 Sobic006G178000--Sobic003G402600 Sobic006G178000--Sobic004G057200 Sobic006G178000--Sobic001G082000 Sobic003G308400 Sobic003G308400 Sobic006G178000--Sobic003G308400 Sobic001G014800 Sobic001G014800 Sobic004G121300--Sobic001G014800 Sobic010G049100 Sobic010G049100 Sobic004G121300--Sobic010G049100 Sobic004G121300--Sobic001G333100 Sobic001G434200 Sobic001G434200 Sobic004G121300--Sobic001G434200 Sobic008G033500 Sobic008G033500 Sobic004G121300--Sobic008G033500 Sobic002G131500 Sobic002G131500 Sobic004G121300--Sobic002G131500 Sobic006G274800 Sobic006G274800 Sobic004G121300--Sobic006G274800 Sobic005G111900 Sobic005G111900 Sobic004G121300--Sobic005G111900 Sobic010G131900 Sobic010G131900 Sobic004G121300--Sobic010G131900 Sobic008G116000 Sobic008G116000 Sobic001G082000--Sobic008G116000 Sobic002G389900 Sobic002G389900 Sobic001G082000--Sobic002G389900 Sobic004G115350 Sobic004G115350 Sobic001G082000--Sobic004G115350 Sobic003G099100 Sobic003G099100 Sobic001G082000--Sobic003G099100 Sobic001G082000--Sobic002G311100 Sobic004G310500 Sobic004G310500 Sobic001G082000--Sobic004G310500 Sobic008G089900 Sobic008G089900 Sobic001G082000--Sobic008G089900 Sobic002G166900 Sobic002G166900 Sobic001G082000--Sobic002G166900 Sobic001G082000--Sobic001G019800
Octagon: transcription factors


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