Gene annotation
Transcriptome id Sobic.006G213800.1
Synonym DECR, Sb06g028410, SDRB
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed
UniProt C5YG02
Pfam PF08659
Panther DB PTHR24322 PTHR24322:SF427
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology K13237; peroxisomal 2,4-dienoyl-CoA reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12800 : short-chain dehydrogenase-reductase B
RAP-DB (Rice) LOC_Os04g52400.1 : oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a057018 , Zm00025a009808
Brachypodium KQJ84576 , KQJ84577
Barley HORVU2Hr1G098920.2 , HORVU2Hr1G098920.3 , HORVU2Hr1G098920.1
Wheat TraesCS2D02G418900 , TraesCS2A02G422500 , TraesCS2B02G441000 , TraesCS2B02G441000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G213800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G362500 WD domain, G-beta repeat domain containing protein, expressed K10570: ERCC8, CKN1, DNA excision repair protein ERCC-8
2 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
3 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
4 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
5 Sobic.009G225000 transmembrane protein 93, putative, expressed -
6 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
7 Sobic.002G268800 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
8 Sobic.004G121300 ATP11 protein, expressed K07555: ATPeAF1, ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
9 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
10 Sobic.001G460600 RING zinc finger protein-like, putative, expressed -
11 Sobic.006G201800 scramblase, putative, expressed -
12 Sobic.004G181900 expressed protein -
13 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
14 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
15 Sobic.007G075500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
16 Sobic.008G088824 - -
17 Sobic.003G370500 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
18 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
19 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
20 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta


Gene co-expression network
sample Sobic006G213800 Sobic006G213800 Sobic003G362500 Sobic003G362500 Sobic006G213800--Sobic003G362500 Sobic006G281800 Sobic006G281800 Sobic006G213800--Sobic006G281800 Sobic005G111900 Sobic005G111900 Sobic006G213800--Sobic005G111900 Sobic001G014800 Sobic001G014800 Sobic006G213800--Sobic001G014800 Sobic009G225000 Sobic009G225000 Sobic006G213800--Sobic009G225000 Sobic004G206700 Sobic004G206700 Sobic006G213800--Sobic004G206700 Sobic002G268800 Sobic002G268800 Sobic006G213800--Sobic002G268800 Sobic004G121300 Sobic004G121300 Sobic006G213800--Sobic004G121300 Sobic009G149500 Sobic009G149500 Sobic006G213800--Sobic009G149500 Sobic003G274800 Sobic003G274800 Sobic003G362500--Sobic003G274800 Sobic003G077900 Sobic003G077900 Sobic003G362500--Sobic003G077900 Sobic003G362500--Sobic006G213800 Sobic003G362500--Sobic001G014800 Sobic006G201800 Sobic006G201800 Sobic003G362500--Sobic006G201800 Sobic003G261500 Sobic003G261500 Sobic003G362500--Sobic003G261500 Sobic010G000900 Sobic010G000900 Sobic003G362500--Sobic010G000900 Sobic003G362500--Sobic005G111900 Sobic003G217400 Sobic003G217400 Sobic003G362500--Sobic003G217400 Sobic006G281800--Sobic009G225000 Sobic003G349300 Sobic003G349300 Sobic006G281800--Sobic003G349300 Sobic001G283200 Sobic001G283200 Sobic006G281800--Sobic001G283200 Sobic004G181900 Sobic004G181900 Sobic006G281800--Sobic004G181900 Sobic001G206900 Sobic001G206900 Sobic006G281800--Sobic001G206900 Sobic002G385900 Sobic002G385900 Sobic006G281800--Sobic002G385900 Sobic006G281800--Sobic004G206700 Sobic010G064600 Sobic010G064600 Sobic006G281800--Sobic010G064600 Sobic003G312200 Sobic003G312200 Sobic006G281800--Sobic003G312200 Sobic007G061400 Sobic007G061400 Sobic005G111900--Sobic007G061400 Sobic005G111900--Sobic001G014800 Sobic006G029000 Sobic006G029000 Sobic005G111900--Sobic006G029000 Sobic006G002201 Sobic006G002201 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic005G111900--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic005G111900--Sobic009G149500 Sobic010G020400 Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic009G225000--Sobic006G281800 Sobic009G225000--Sobic001G283200 Sobic009G225000--Sobic004G194900 Sobic009G225000--Sobic004G181900 Sobic001G461900 Sobic001G461900 Sobic009G225000--Sobic001G461900 Sobic007G142500 Sobic007G142500 Sobic009G225000--Sobic007G142500 Sobic001G460600 Sobic001G460600 Sobic009G225000--Sobic001G460600 Sobic009G225000--Sobic004G206700 Sobic009G225000--Sobic003G349300 Sobic002G405400 Sobic002G405400 Sobic004G206700--Sobic002G405400 Sobic004G206700--Sobic009G084000 Sobic001G199100 Sobic001G199100 Sobic004G206700--Sobic001G199100 Sobic010G223300 Sobic010G223300 Sobic004G206700--Sobic010G223300 Sobic003G338500 Sobic003G338500 Sobic004G206700--Sobic003G338500 Sobic004G206700--Sobic006G180000 Sobic009G123600 Sobic009G123600 Sobic004G206700--Sobic009G123600 Sobic002G059300 Sobic002G059300 Sobic004G206700--Sobic002G059300 Sobic004G206700--Sobic004G194900 Sobic005G177700 Sobic005G177700 Sobic002G268800--Sobic005G177700 Sobic002G268800--Sobic006G180000 Sobic003G316200 Sobic003G316200 Sobic002G268800--Sobic003G316200 Sobic003G264100 Sobic003G264100 Sobic002G268800--Sobic003G264100 Sobic004G241900 Sobic004G241900 Sobic002G268800--Sobic004G241900 Sobic007G056100 Sobic007G056100 Sobic002G268800--Sobic007G056100 Sobic002G268800--Sobic003G312200 Sobic002G238400 Sobic002G238400 Sobic002G268800--Sobic002G238400 Sobic009G068500 Sobic009G068500 Sobic002G268800--Sobic009G068500 Sobic004G121300--Sobic001G014800 Sobic010G049100 Sobic010G049100 Sobic004G121300--Sobic010G049100 Sobic004G121300--Sobic001G333100 Sobic001G434200 Sobic001G434200 Sobic004G121300--Sobic001G434200 Sobic004G121300--Sobic008G033500 Sobic002G131500 Sobic002G131500 Sobic004G121300--Sobic002G131500 Sobic006G274800 Sobic006G274800 Sobic004G121300--Sobic006G274800 Sobic004G121300--Sobic005G111900 Sobic010G131900 Sobic010G131900 Sobic004G121300--Sobic010G131900 Sobic009G149500--Sobic001G206900 Sobic009G149500--Sobic010G020400 Sobic007G188300 Sobic007G188300 Sobic009G149500--Sobic007G188300 Sobic009G149500--Sobic010G223300 Sobic009G149500--Sobic001G014800 Sobic009G149500--Sobic009G192000 Sobic009G149500--Sobic004G181900 Sobic004G010900 Sobic004G010900 Sobic009G149500--Sobic004G010900 Sobic009G149500--Sobic003G338500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.