Gene annotation
Transcriptome id Sobic.003G362500.1
Synonym Sb03g040420, ATCSA-1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6Q735
Pfam PF00400
Panther DB PTHR22850:SF2 PTHR22850
NCBI CDD KOG4283; Transcription-coupled repair protein CSA, contains WD40 domain
KEGG Orthology K10570; ERCC8, CKN1, DNA excision repair protein ERCC-8
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G27840 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g20430.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026782
Brachypodium KQK10663
Barley HORVU3Hr1G084470.1
Wheat TraesCS3D02G364100 , TraesCS3A02G371000 , TraesCS3A02G371000 , TraesCS3B02G403200 , TraesCS3B02G403200 , TraesCS3D02G364100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G274800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
2 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
3 Sobic.006G213800 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
4 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
5 Sobic.006G201800 scramblase, putative, expressed -
6 Sobic.003G261500 lipase, putative, expressed -
7 Sobic.010G000900 spotted leaf 11, putative, expressed -
8 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
9 Sobic.003G217400 zinc finger, C3HC4 type family protein, expressed -
10 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
11 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
12 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
13 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
14 Sobic.007G188300 integral membrane family protein, putative, expressed -
15 Sobic.001G364600 transmembrane protein 85, putative, expressed -
16 Sobic.005G168600 NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
17 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
18 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
19 Sobic.009G174000 expressed protein -
20 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72


Gene co-expression network
sample Sobic003G362500 Sobic003G362500 Sobic003G274800 Sobic003G274800 Sobic003G362500--Sobic003G274800 Sobic003G077900 Sobic003G077900 Sobic003G362500--Sobic003G077900 Sobic006G213800 Sobic006G213800 Sobic003G362500--Sobic006G213800 Sobic001G014800 Sobic001G014800 Sobic003G362500--Sobic001G014800 Sobic006G201800 Sobic006G201800 Sobic003G362500--Sobic006G201800 Sobic003G261500 Sobic003G261500 Sobic003G362500--Sobic003G261500 Sobic010G000900 Sobic010G000900 Sobic003G362500--Sobic010G000900 Sobic005G111900 Sobic005G111900 Sobic003G362500--Sobic005G111900 Sobic003G217400 Sobic003G217400 Sobic003G362500--Sobic003G217400 Sobic004G212200 Sobic004G212200 Sobic003G274800--Sobic004G212200 Sobic003G274800--Sobic010G000900 Sobic003G261400 Sobic003G261400 Sobic003G274800--Sobic003G261400 Sobic002G393500 Sobic002G393500 Sobic003G274800--Sobic002G393500 Sobic001G283200 Sobic001G283200 Sobic003G274800--Sobic001G283200 Sobic003G274800--Sobic003G261500 Sobic003G012200 Sobic003G012200 Sobic003G274800--Sobic003G012200 Sobic003G274800--Sobic003G077900 Sobic001G047400 Sobic001G047400 Sobic003G274800--Sobic001G047400 Sobic002G400000 Sobic002G400000 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic006G213800--Sobic003G362500 Sobic006G281800 Sobic006G281800 Sobic006G213800--Sobic006G281800 Sobic006G213800--Sobic005G111900 Sobic006G213800--Sobic001G014800 Sobic009G225000 Sobic009G225000 Sobic006G213800--Sobic009G225000 Sobic004G206700 Sobic004G206700 Sobic006G213800--Sobic004G206700 Sobic002G268800 Sobic002G268800 Sobic006G213800--Sobic002G268800 Sobic004G121300 Sobic004G121300 Sobic006G213800--Sobic004G121300 Sobic009G149500 Sobic009G149500 Sobic006G213800--Sobic009G149500 Sobic010G020400 Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic006G201800--Sobic001G014800 Sobic006G201800--Sobic006G180000 Sobic001G007000 Sobic001G007000 Sobic006G201800--Sobic001G007000 Sobic006G201800--Sobic009G192000 Sobic006G201800--Sobic009G149500 Sobic009G068500 Sobic009G068500 Sobic006G201800--Sobic009G068500 Sobic006G201800--Sobic002G047700 Sobic004G054100 Sobic004G054100 Sobic006G201800--Sobic004G054100 Sobic006G201800--Sobic004G206700 Sobic003G261500--Sobic003G261400 Sobic003G261500--Sobic003G217400 Sobic003G261500--Sobic010G000900 Sobic003G261500--Sobic001G283200 Sobic003G261500--Sobic007G168600 Sobic001G051200 Sobic001G051200 Sobic003G261500--Sobic001G051200 Sobic003G261500--Sobic004G212200 Sobic003G124800 Sobic003G124800 Sobic003G261500--Sobic003G124800 Sobic004G086600 Sobic004G086600 Sobic003G261500--Sobic004G086600 Sobic010G000900--Sobic002G400000 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic010G000900--Sobic003G261400 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic007G061400 Sobic007G061400 Sobic005G111900--Sobic007G061400 Sobic005G111900--Sobic001G014800 Sobic006G029000 Sobic006G029000 Sobic005G111900--Sobic006G029000 Sobic006G002201 Sobic006G002201 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic003G349300 Sobic003G349300 Sobic005G111900--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic005G111900--Sobic009G149500 Sobic003G217400--Sobic003G261500 Sobic003G217400--Sobic003G077900 Sobic009G004600 Sobic009G004600 Sobic003G217400--Sobic009G004600 Sobic003G217400--Sobic002G400000 Sobic001G314500 Sobic001G314500 Sobic003G217400--Sobic001G314500 Sobic003G217400--Sobic010G000900 Sobic009G198500 Sobic009G198500 Sobic003G217400--Sobic009G198500 Sobic003G217400--Sobic001G051200 Sobic003G217400--Sobic007G168600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.