Gene annotation
Transcriptome id Sobic.006G244700.1
Synonym COS1, Sb06g031050
Functional annotation 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed
UniProt C5Y9F9
Pfam PF00885
Panther DB PTHR21058
NCBI CDD KOG3243; 6,7-dimethyl-8-ribityllumazine synthase
KEGG Orthology K00794; ribH, 6,7-dimethyl-8-ribityllumazine synthase
Gene Ontology GO:0009349; riboflavin synthase complex GO:0009231riboflavin biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G44050 : 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase
RAP-DB (Rice) LOC_Os04g42000.1 : 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a057234 , Zm00025a009497
Brachypodium KQK00225 , KQK13533 , KQK13532
Barley -
Wheat TraesCS2A02G352600 , TraesCS2B02G371700 , TraesCS2D02G351600
Populus -


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cDNA sequences
Sobic.006G244700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
2 Sobic.001G048200 elongation factor P, putative, expressed -
3 Sobic.005G044800 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.007G188300 integral membrane family protein, putative, expressed -
5 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
6 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
7 Sobic.003G261400 DUF292 domain containing protein, expressed -
8 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
9 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
10 Sobic.003G261500 lipase, putative, expressed -
11 Sobic.005G168600 NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
12 Sobic.003G217400 zinc finger, C3HC4 type family protein, expressed -
13 Sobic.002G116900 expressed protein -
14 Sobic.003G372000 proton-dependent oligopeptide transport, putative, expressed -
15 Sobic.003G274800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
16 Sobic.002G039000 ML domain protein, putative, expressed -
17 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
18 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
19 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
20 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin


Gene co-expression network
sample Sobic006G244700 Sobic006G244700 Sobic001G263000 Sobic001G263000 Sobic006G244700--Sobic001G263000 Sobic001G048200 Sobic001G048200 Sobic006G244700--Sobic001G048200 Sobic005G044800 Sobic005G044800 Sobic006G244700--Sobic005G044800 Sobic007G188300 Sobic007G188300 Sobic006G244700--Sobic007G188300 Sobic004G130900 Sobic004G130900 Sobic006G244700--Sobic004G130900 Sobic009G004600 Sobic009G004600 Sobic006G244700--Sobic009G004600 Sobic003G261400 Sobic003G261400 Sobic006G244700--Sobic003G261400 Sobic002G209400 Sobic002G209400 Sobic006G244700--Sobic002G209400 Sobic004G081800 Sobic004G081800 Sobic006G244700--Sobic004G081800 Sobic001G263000--Sobic009G004600 Sobic001G263000--Sobic006G244700 Sobic009G033900 Sobic009G033900 Sobic001G263000--Sobic009G033900 Sobic001G263000--Sobic002G209400 Sobic002G268400 Sobic002G268400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic004G074300 Sobic004G074300 Sobic001G263000--Sobic004G074300 Sobic004G356900 Sobic004G356900 Sobic001G263000--Sobic004G356900 Sobic010G057900 Sobic010G057900 Sobic001G263000--Sobic010G057900 Sobic001G048200--Sobic006G244700 Sobic003G055700 Sobic003G055700 Sobic001G048200--Sobic003G055700 Sobic002G116900 Sobic002G116900 Sobic001G048200--Sobic002G116900 Sobic010G049100 Sobic010G049100 Sobic001G048200--Sobic010G049100 Sobic008G032600 Sobic008G032600 Sobic001G048200--Sobic008G032600 Sobic004G080100 Sobic004G080100 Sobic001G048200--Sobic004G080100 Sobic004G040900 Sobic004G040900 Sobic001G048200--Sobic004G040900 Sobic001G048200--Sobic007G188300 Sobic001G468600 Sobic001G468600 Sobic001G048200--Sobic001G468600 Sobic004G358600 Sobic004G358600 Sobic005G044800--Sobic004G358600 Sobic003G012200 Sobic003G012200 Sobic005G044800--Sobic003G012200 Sobic003G372000 Sobic003G372000 Sobic005G044800--Sobic003G372000 Sobic005G044800--Sobic006G244700 Sobic003G344900 Sobic003G344900 Sobic005G044800--Sobic003G344900 Sobic004G127700 Sobic004G127700 Sobic005G044800--Sobic004G127700 Sobic005G044800--Sobic002G116900 Sobic003G273600 Sobic003G273600 Sobic005G044800--Sobic003G273600 Sobic005G044800--Sobic003G055700 Sobic009G149500 Sobic009G149500 Sobic007G188300--Sobic009G149500 Sobic001G085100 Sobic001G085100 Sobic007G188300--Sobic001G085100 Sobic010G205300 Sobic010G205300 Sobic007G188300--Sobic010G205300 Sobic007G188300--Sobic006G244700 Sobic007G188300--Sobic001G263000 Sobic001G014800 Sobic001G014800 Sobic007G188300--Sobic001G014800 Sobic007G014900 Sobic007G014900 Sobic007G188300--Sobic007G014900 Sobic007G188300--Sobic004G356900 Sobic007G188300--Sobic002G209400 Sobic002G400000 Sobic002G400000 Sobic004G130900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic004G130900--Sobic004G327300 Sobic004G130900--Sobic003G261400 Sobic003G367451 Sobic003G367451 Sobic004G130900--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G130900--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G130900--Sobic007G096700 Sobic009G198500 Sobic009G198500 Sobic004G130900--Sobic009G198500 Sobic010G000900 Sobic010G000900 Sobic004G130900--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic004G130900--Sobic007G168600 Sobic009G004600--Sobic002G400000 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G004600--Sobic009G198500 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic002G113900 Sobic002G113900 Sobic009G004600--Sobic002G113900 Sobic009G004600--Sobic010G205300 Sobic009G004600--Sobic007G168600 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic003G261400--Sobic010G000900 Sobic002G209400--Sobic001G263000 Sobic002G209400--Sobic006G244700 Sobic004G232800 Sobic004G232800 Sobic002G209400--Sobic004G232800 Sobic007G061400 Sobic007G061400 Sobic002G209400--Sobic007G061400 Sobic002G209400--Sobic007G188300 Sobic002G209400--Sobic010G057900 Sobic002G111200 Sobic002G111200 Sobic002G209400--Sobic002G111200 Sobic005G111900 Sobic005G111900 Sobic002G209400--Sobic005G111900 Sobic002G209400--Sobic001G014800 Sobic004G081800--Sobic001G458700 Sobic004G081800--Sobic003G261400 Sobic002G341800 Sobic002G341800 Sobic004G081800--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic004G081800--Sobic004G224900 Sobic007G176200 Sobic007G176200 Sobic004G081800--Sobic007G176200 Sobic001G502200 Sobic001G502200 Sobic004G081800--Sobic001G502200 Sobic001G010700 Sobic001G010700 Sobic004G081800--Sobic001G010700 Sobic004G081800--Sobic007G168600 Sobic006G252200 Sobic006G252200 Sobic004G081800--Sobic006G252200
Octagon: transcription factors


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