Gene annotation
Transcriptome id Sobic.002G268800.1
Synonym Sb02g030280
Functional annotation arsenical pump-driving ATPase, putative, expressed
UniProt C5X622
Pfam PF01656
Panther DB PTHR10803 PTHR10803:SF3
NCBI CDD KOG2825; Putative arsenite-translocating ATPase
KEGG Orthology K01551; arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G01910 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g34970.1 : arsenical pump-driving ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a014380 , Zm00025a047700
Brachypodium KQJ91099
Barley HORVU5Hr1G080280.3 , HORVU5Hr1G080280.2 , HORVU5Hr1G080280.4 , HORVU5Hr1G080280.7
Wheat TraesCS5A02G309700 , TraesCS5A02G309700 , TraesCS5B02G310400 , TraesCS5D02G316700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G177700 transmembrane protein 49, putative, expressed -
2 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
3 Sobic.003G316200 transmembrane protein 49, putative, expressed -
4 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
5 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
6 Sobic.007G056100 expressed protein K15077: elongin-A
7 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
8 Sobic.002G238400 expressed protein -
9 Sobic.009G068500 expressed protein -
10 Sobic.006G260500 expressed protein -
11 Sobic.003G173600 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
12 Sobic.010G275400 expressed protein -
13 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
14 Sobic.002G405400 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, putative, expressed K01001: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
15 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
16 Sobic.010G184300 glycosyltransferase family protein, putative, expressed K00771: protein xylosyltransferase
17 Sobic.006G201800 scramblase, putative, expressed -
18 Sobic.007G156200 glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed K00753: glycoprotein 3-alpha-L-fucosyltransferase
19 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
20 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G268800 Sobic002G268800 Sobic005G177700 Sobic005G177700 Sobic002G268800--Sobic005G177700 Sobic006G180000 Sobic006G180000 Sobic002G268800--Sobic006G180000 Sobic003G316200 Sobic003G316200 Sobic002G268800--Sobic003G316200 Sobic003G264100 Sobic003G264100 Sobic002G268800--Sobic003G264100 Sobic004G241900 Sobic004G241900 Sobic002G268800--Sobic004G241900 Sobic007G056100 Sobic007G056100 Sobic002G268800--Sobic007G056100 Sobic003G312200 Sobic003G312200 Sobic002G268800--Sobic003G312200 Sobic002G238400 Sobic002G238400 Sobic002G268800--Sobic002G238400 Sobic009G068500 Sobic009G068500 Sobic002G268800--Sobic009G068500 Sobic005G177700--Sobic003G316200 Sobic005G177700--Sobic007G056100 Sobic002G355800 Sobic002G355800 Sobic005G177700--Sobic002G355800 Sobic006G077300 Sobic006G077300 Sobic005G177700--Sobic006G077300 Sobic009G041700 Sobic009G041700 Sobic005G177700--Sobic009G041700 Sobic001G253300 Sobic001G253300 Sobic005G177700--Sobic001G253300 Sobic004G228800 Sobic004G228800 Sobic005G177700--Sobic004G228800 Sobic003G365100 Sobic003G365100 Sobic005G177700--Sobic003G365100 Sobic005G177700--Sobic002G268800 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic003G316200--Sobic001G253300 Sobic003G316200--Sobic005G177700 Sobic003G316200--Sobic003G365100 Sobic001G188400 Sobic001G188400 Sobic003G316200--Sobic001G188400 Sobic006G250800 Sobic006G250800 Sobic003G316200--Sobic006G250800 Sobic004G078700 Sobic004G078700 Sobic003G316200--Sobic004G078700 Sobic002G079000 Sobic002G079000 Sobic003G316200--Sobic002G079000 Sobic003G316200--Sobic002G355800 Sobic003G114400 Sobic003G114400 Sobic003G316200--Sobic003G114400 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic003G264100--Sobic006G180000 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic007G005500 Sobic007G005500 Sobic004G241900--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic004G241900--Sobic006G260500 Sobic003G209200 Sobic003G209200 Sobic004G241900--Sobic003G209200 Sobic005G062200 Sobic005G062200 Sobic004G241900--Sobic005G062200 Sobic004G241900--Sobic003G114400 Sobic004G241900--Sobic006G196300 Sobic006G277000 Sobic006G277000 Sobic004G241900--Sobic006G277000 Sobic001G263600 Sobic001G263600 Sobic004G241900--Sobic001G263600 Sobic004G261600 Sobic004G261600 Sobic004G241900--Sobic004G261600 Sobic007G056100--Sobic005G177700 Sobic010G243400 Sobic010G243400 Sobic007G056100--Sobic010G243400 Sobic007G056100--Sobic002G355800 Sobic009G224000 Sobic009G224000 Sobic007G056100--Sobic009G224000 Sobic003G199500 Sobic003G199500 Sobic007G056100--Sobic003G199500 Sobic001G421400 Sobic001G421400 Sobic007G056100--Sobic001G421400 Sobic010G261600 Sobic010G261600 Sobic007G056100--Sobic010G261600 Sobic007G056100--Sobic002G303600 Sobic001G465400 Sobic001G465400 Sobic007G056100--Sobic001G465400 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic009G228700 Sobic009G228700 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic007G028500 Sobic007G028500 Sobic002G238400--Sobic007G028500 Sobic001G389200 Sobic001G389200 Sobic002G238400--Sobic001G389200 Sobic002G395500 Sobic002G395500 Sobic002G238400--Sobic002G395500 Sobic008G168200 Sobic008G168200 Sobic002G238400--Sobic008G168200 Sobic002G238400--Sobic006G277000 Sobic001G332300 Sobic001G332300 Sobic002G238400--Sobic001G332300 Sobic003G202600 Sobic003G202600 Sobic002G238400--Sobic003G202600 Sobic002G294100 Sobic002G294100 Sobic002G238400--Sobic002G294100 Sobic001G358500 Sobic001G358500 Sobic002G238400--Sobic001G358500 Sobic009G068500--Sobic001G007000 Sobic001G193300 Sobic001G193300 Sobic009G068500--Sobic001G193300 Sobic009G068500--Sobic003G264100 Sobic007G093800 Sobic007G093800 Sobic009G068500--Sobic007G093800 Sobic003G006300 Sobic003G006300 Sobic009G068500--Sobic003G006300 Sobic003G365300 Sobic003G365300 Sobic009G068500--Sobic003G365300 Sobic002G359400 Sobic002G359400 Sobic009G068500--Sobic002G359400 Sobic009G068500--Sobic010G020400 Sobic010G251000 Sobic010G251000 Sobic009G068500--Sobic010G251000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.