Gene annotation
Transcriptome id Sobic.003G173600.1,Sobic.003G173600.2
Synonym AMSH3, Sb03g020630
Functional annotation mov34/MPN/PAD-1 family protein, expressed
UniProt C5XLH5 , A0A1W0VXQ5
Pfam PF08969 PF01398
Panther DB PTHR12947 PTHR12947:SF11
NCBI CDD KOG2880; SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain
KEGG Orthology K11866; STAMBP, STAM-binding protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G16144 : associated molecule with the SH3 domain of STAM 3
RAP-DB (Rice) LOC_Os01g31470.1 : mov34/MPN/PAD-1 family protein, expressed
MaizeGDB (Corn) Zm00025a024461 , Zm00025a036367 , Zm00025a036186
Brachypodium KQK04454 , KQK04236 , PNT70562
Barley HORVU4Hr1G009590.6 , HORVU4Hr1G009590.5 , HORVU3Hr1G043440.18 , HORVU3Hr1G043440.10 , HORVU3Hr1G043440.11 , HORVU3Hr1G043440.16 , HORVU3Hr1G043440.17 , HORVU3Hr1G043440.14 , HORVU3Hr1G043440.15 , HORVU3Hr1G043440.1 , HORVU3Hr1G043440.2 , HORVU3Hr1G043440.4 , HORVU3Hr1G043440.5 , HORVU3Hr1G043440.6 , HORVU3Hr1G043440.7 , HORVU3Hr1G043440.8 , HORVU3Hr1G043440.9 , HORVU4Hr1G009590.8 , HORVU4Hr1G009590.7 , HORVU4Hr1G009590.4 , HORVU4Hr1G009590.3 , HORVU4Hr1G009590.2
Wheat TraesCS4A02G257200 , TraesCS4A02G257200 , TraesCS4B02G057300 , TraesCS4B02G057300 , TraesCS4D02G057500 , TraesCS4D02G057500
Populus PNT00394 , PNT00395 , PNT00393


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
2 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
3 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
4 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
5 Sobic.004G028100 expressed protein -
6 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
7 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
8 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
9 Sobic.003G243700 vacuolar protein-sorting-associated protein 25, putative, expressed K12189: VPS25, ESCRT-II complex subunit VPS25
10 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
11 Sobic.006G260500 expressed protein -
12 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
13 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
14 Sobic.008G085700 exocyst complex component 5, putative, expressed -
15 Sobic.009G109925 - -
16 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
17 Sobic.008G033500 nucleolar GTPase, putative, expressed -
18 Sobic.008G104200 nitrilase, putative, expressed -
19 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
20 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2


Gene co-expression network
sample Sobic003G173600 Sobic003G173600 Sobic007G162100 Sobic007G162100 Sobic003G173600--Sobic007G162100 Sobic003G264100 Sobic003G264100 Sobic003G173600--Sobic003G264100 Sobic006G180000 Sobic006G180000 Sobic003G173600--Sobic006G180000 Sobic002G262900 Sobic002G262900 Sobic003G173600--Sobic002G262900 Sobic004G028100 Sobic004G028100 Sobic003G173600--Sobic004G028100 Sobic010G020400 Sobic010G020400 Sobic003G173600--Sobic010G020400 Sobic010G223300 Sobic010G223300 Sobic003G173600--Sobic010G223300 Sobic002G303600 Sobic002G303600 Sobic003G173600--Sobic002G303600 Sobic003G243700 Sobic003G243700 Sobic003G173600--Sobic003G243700 Sobic006G127600 Sobic006G127600 Sobic007G162100--Sobic006G127600 Sobic001G283600 Sobic001G283600 Sobic007G162100--Sobic001G283600 Sobic009G084900 Sobic009G084900 Sobic007G162100--Sobic009G084900 Sobic001G435400 Sobic001G435400 Sobic007G162100--Sobic001G435400 Sobic003G189600 Sobic003G189600 Sobic007G162100--Sobic003G189600 Sobic007G162100--Sobic010G020400 Sobic007G162100--Sobic003G264100 Sobic007G132100 Sobic007G132100 Sobic007G162100--Sobic007G132100 Sobic009G192300 Sobic009G192300 Sobic007G162100--Sobic009G192300 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic006G180000--Sobic003G264100 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic006G180000--Sobic004G028100 Sobic002G008800 Sobic002G008800 Sobic002G262900--Sobic002G008800 Sobic004G275700 Sobic004G275700 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic004G039600 Sobic004G039600 Sobic002G262900--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic002G262900--Sobic010G205800 Sobic010G261600 Sobic010G261600 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic001G124200 Sobic001G124200 Sobic002G262900--Sobic001G124200 Sobic004G028100--Sobic002G303600 Sobic004G028100--Sobic009G092400 Sobic004G028100--Sobic006G180000 Sobic009G249700 Sobic009G249700 Sobic004G028100--Sobic009G249700 Sobic007G218000 Sobic007G218000 Sobic004G028100--Sobic007G218000 Sobic004G028100--Sobic003G173600 Sobic010G243400 Sobic010G243400 Sobic004G028100--Sobic010G243400 Sobic001G449900 Sobic001G449900 Sobic004G028100--Sobic001G449900 Sobic004G028100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic003G338500 Sobic003G338500 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic010G020400--Sobic002G008800 Sobic008G055900 Sobic008G055900 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300 Sobic010G223300--Sobic008G055900 Sobic010G223300--Sobic001G449900 Sobic010G223300--Sobic002G020700 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic010G223300--Sobic002G008800 Sobic010G223300--Sobic006G180000 Sobic002G303600--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic002G303600--Sobic006G180000 Sobic002G303600--Sobic007G218000 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic003G243700--Sobic010G243400 Sobic001G114000 Sobic001G114000 Sobic003G243700--Sobic001G114000 Sobic003G243700--Sobic003G173600 Sobic003G243700--Sobic002G262900 Sobic003G270600 Sobic003G270600 Sobic003G243700--Sobic003G270600 Sobic003G243700--Sobic007G218000 Sobic009G124700 Sobic009G124700 Sobic003G243700--Sobic009G124700 Sobic003G243700--Sobic007G132100 Sobic003G243700--Sobic004G178200
Octagon: transcription factors


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