Gene annotation
Transcriptome id Sobic.003G243700.1
Synonym VPS25, Sb03g030020
Functional annotation vacuolar protein-sorting-associated protein 25, putative, expressed
UniProt C5XFB6
Pfam PF05871
Panther DB PTHR13149 PTHR13149:SF0
NCBI CDD KOG4068; Uncharacterized conserved protein
KEGG Orthology K12189; VPS25, ESCRT-II complex subunit VPS25
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19003 : E2F/DP family winged-helix DNA-binding domain
RAP-DB (Rice) LOC_Os01g46932.1 : vacuolar protein-sorting-associated protein 25, putative, expressed
MaizeGDB (Corn) Zm00025a028179 , Zm00025a038711
Brachypodium KQK16760
Barley HORVU3Hr1G059280.18 , HORVU3Hr1G059280.11 , HORVU3Hr1G059280.10 , HORVU3Hr1G059280.13 , HORVU3Hr1G059280.12 , HORVU3Hr1G059280.15 , HORVU3Hr1G059280.14 , HORVU3Hr1G059280.17 , HORVU3Hr1G059280.16 , HORVU3Hr1G059280.9 , HORVU3Hr1G059280.8 , HORVU3Hr1G059280.5 , HORVU3Hr1G059280.4 , HORVU3Hr1G059280.7 , HORVU3Hr1G059280.6 , HORVU3Hr1G059280.1 , HORVU3Hr1G059280.3 , HORVU3Hr1G059280.2
Wheat TraesCS3D02G238800 , TraesCS3A02G530900 , TraesCS3B02G267000 , TraesCS3A02G238500
Populus -


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cDNA sequences
Sobic.003G243700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G243400 expressed protein -
2 Sobic.001G114000 expressed protein -
3 Sobic.003G173600 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
4 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
5 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
6 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
7 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
8 Sobic.007G132100 myrosinase precursor, putative, expressed -
9 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
10 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
11 Sobic.007G125000 OsAPRL4 adenosine 5\'-phosphosulfate reductase-like OsAPRL4, expressed -
12 Sobic.009G041700 Fibronectin type III domain containing protein, expressed -
13 Sobic.004G003401 - -
14 Sobic.009G224000 OsQSOXL1 quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed K10758: thiol oxidase
15 Sobic.008G173400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
16 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
17 Sobic.003G143200 expressed protein -
18 Sobic.002G112700 glutamine-dependent NAD, putative, expressed K01950: E6.3.5.1, NADSYN1, QNS1, NAD+ synthase (glutamine-hydrolysing)
19 Sobic.008G104200 nitrilase, putative, expressed -
20 Sobic.005G177700 transmembrane protein 49, putative, expressed -


Gene co-expression network
sample Sobic003G243700 Sobic003G243700 Sobic010G243400 Sobic010G243400 Sobic003G243700--Sobic010G243400 Sobic001G114000 Sobic001G114000 Sobic003G243700--Sobic001G114000 Sobic003G173600 Sobic003G173600 Sobic003G243700--Sobic003G173600 Sobic002G262900 Sobic002G262900 Sobic003G243700--Sobic002G262900 Sobic003G270600 Sobic003G270600 Sobic003G243700--Sobic003G270600 Sobic007G218000 Sobic007G218000 Sobic003G243700--Sobic007G218000 Sobic009G124700 Sobic009G124700 Sobic003G243700--Sobic009G124700 Sobic007G132100 Sobic007G132100 Sobic003G243700--Sobic007G132100 Sobic004G178200 Sobic004G178200 Sobic003G243700--Sobic004G178200 Sobic008G165000 Sobic008G165000 Sobic010G243400--Sobic008G165000 Sobic007G056100 Sobic007G056100 Sobic010G243400--Sobic007G056100 Sobic010G261600 Sobic010G261600 Sobic010G243400--Sobic010G261600 Sobic010G243400--Sobic003G243700 Sobic009G041700 Sobic009G041700 Sobic010G243400--Sobic009G041700 Sobic009G224000 Sobic009G224000 Sobic010G243400--Sobic009G224000 Sobic004G003401 Sobic004G003401 Sobic010G243400--Sobic004G003401 Sobic008G173400 Sobic008G173400 Sobic010G243400--Sobic008G173400 Sobic001G421400 Sobic001G421400 Sobic010G243400--Sobic001G421400 Sobic007G217000 Sobic007G217000 Sobic001G114000--Sobic007G217000 Sobic002G112700 Sobic002G112700 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic004G067700 Sobic004G067700 Sobic001G114000--Sobic004G067700 Sobic009G166300 Sobic009G166300 Sobic001G114000--Sobic009G166300 Sobic008G047800 Sobic008G047800 Sobic001G114000--Sobic008G047800 Sobic004G072100 Sobic004G072100 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400 Sobic007G162100 Sobic007G162100 Sobic003G173600--Sobic007G162100 Sobic003G264100 Sobic003G264100 Sobic003G173600--Sobic003G264100 Sobic006G180000 Sobic006G180000 Sobic003G173600--Sobic006G180000 Sobic003G173600--Sobic002G262900 Sobic004G028100 Sobic004G028100 Sobic003G173600--Sobic004G028100 Sobic010G020400 Sobic010G020400 Sobic003G173600--Sobic010G020400 Sobic010G223300 Sobic010G223300 Sobic003G173600--Sobic010G223300 Sobic002G303600 Sobic002G303600 Sobic003G173600--Sobic002G303600 Sobic003G173600--Sobic003G243700 Sobic002G008800 Sobic002G008800 Sobic002G262900--Sobic002G008800 Sobic004G275700 Sobic004G275700 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic004G039600 Sobic004G039600 Sobic002G262900--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic002G262900--Sobic010G205800 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic001G124200 Sobic001G124200 Sobic002G262900--Sobic001G124200 Sobic004G236200 Sobic004G236200 Sobic003G270600--Sobic004G236200 Sobic003G394200 Sobic003G394200 Sobic003G270600--Sobic003G394200 Sobic009G229600 Sobic009G229600 Sobic003G270600--Sobic009G229600 Sobic003G427600 Sobic003G427600 Sobic003G270600--Sobic003G427600 Sobic009G226400 Sobic009G226400 Sobic003G270600--Sobic009G226400 Sobic003G270600--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic003G270600--Sobic001G369000 Sobic009G049400 Sobic009G049400 Sobic003G270600--Sobic009G049400 Sobic004G228800 Sobic004G228800 Sobic003G270600--Sobic004G228800 Sobic007G218000--Sobic007G132100 Sobic007G218000--Sobic004G072100 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic009G124700--Sobic007G218000 Sobic009G124700--Sobic009G044800 Sobic003G443100 Sobic003G443100 Sobic009G124700--Sobic003G443100 Sobic009G177500 Sobic009G177500 Sobic009G124700--Sobic009G177500 Sobic007G075900 Sobic007G075900 Sobic009G124700--Sobic007G075900 Sobic003G118200 Sobic003G118200 Sobic009G124700--Sobic003G118200 Sobic001G441400 Sobic001G441400 Sobic009G124700--Sobic001G441400 Sobic009G124700--Sobic007G132100 Sobic005G138300 Sobic005G138300 Sobic009G124700--Sobic005G138300 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic007G132100--Sobic004G039600 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic007G132100--Sobic010G204400 Sobic004G178200--Sobic007G132100 Sobic004G178200--Sobic007G218000 Sobic004G178200--Sobic006G136400 Sobic004G178200--Sobic006G131000 Sobic006G126100 Sobic006G126100 Sobic004G178200--Sobic006G126100 Sobic004G178200--Sobic006G012500 Sobic010G116600 Sobic010G116600 Sobic004G178200--Sobic010G116600 Sobic004G178200--Sobic002G303600 Sobic004G178200--Sobic004G039600
Octagon: transcription factors


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