Gene annotation
Transcriptome id Sobic.001G460600.1
Synonym Sb01g043230
Functional annotation RING zinc finger protein-like, putative, expressed
UniProt C5WTN7
Pfam PF13445
Panther DB PTHR13139 PTHR13139:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G29270 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g11260.1 : RING zinc finger protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a053105
Brachypodium KQK22969
Barley HORVU4Hr1G068950.4 , HORVU4Hr1G068950.5 , HORVU4Hr1G068950.2 , HORVU4Hr1G068950.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G225000 transmembrane protein 93, putative, expressed -
2 Sobic.001G106700 expressed protein -
3 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
4 Sobic.003G370900 expressed protein -
5 Sobic.010G000900 spotted leaf 11, putative, expressed -
6 Sobic.003G117900 protein kinase, putative, expressed -
7 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
8 Sobic.004G289800 expressed protein -
9 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
10 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
11 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
12 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
13 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
14 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
15 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
16 Sobic.001G459500 leucine rich repeat containing protein, expressed -
17 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
18 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
19 Sobic.007G216100 expressed protein -
20 Sobic.010G188200 SFT2, putative, expressed -


Gene co-expression network
sample Sobic001G460600 Sobic001G460600 Sobic009G225000 Sobic009G225000 Sobic001G460600--Sobic009G225000 Sobic001G106700 Sobic001G106700 Sobic001G460600--Sobic001G106700 Sobic009G135600 Sobic009G135600 Sobic001G460600--Sobic009G135600 Sobic003G370900 Sobic003G370900 Sobic001G460600--Sobic003G370900 Sobic010G000900 Sobic010G000900 Sobic001G460600--Sobic010G000900 Sobic003G117900 Sobic003G117900 Sobic001G460600--Sobic003G117900 Sobic001G461900 Sobic001G461900 Sobic001G460600--Sobic001G461900 Sobic004G289800 Sobic004G289800 Sobic001G460600--Sobic004G289800 Sobic003G323600 Sobic003G323600 Sobic001G460600--Sobic003G323600 Sobic006G281800 Sobic006G281800 Sobic009G225000--Sobic006G281800 Sobic001G283200 Sobic001G283200 Sobic009G225000--Sobic001G283200 Sobic004G194900 Sobic004G194900 Sobic009G225000--Sobic004G194900 Sobic004G181900 Sobic004G181900 Sobic009G225000--Sobic004G181900 Sobic009G225000--Sobic001G461900 Sobic007G142500 Sobic007G142500 Sobic009G225000--Sobic007G142500 Sobic009G225000--Sobic001G460600 Sobic004G206700 Sobic004G206700 Sobic009G225000--Sobic004G206700 Sobic003G349300 Sobic003G349300 Sobic009G225000--Sobic003G349300 Sobic001G106700--Sobic003G370900 Sobic001G106700--Sobic003G117900 Sobic001G007200 Sobic001G007200 Sobic001G106700--Sobic001G007200 Sobic001G473300 Sobic001G473300 Sobic001G106700--Sobic001G473300 Sobic001G106700--Sobic001G460600 Sobic001G415500 Sobic001G415500 Sobic001G106700--Sobic001G415500 Sobic002G134001 Sobic002G134001 Sobic001G106700--Sobic002G134001 Sobic007G216100 Sobic007G216100 Sobic001G106700--Sobic007G216100 Sobic009G185800 Sobic009G185800 Sobic001G106700--Sobic009G185800 Sobic009G135600--Sobic001G461900 Sobic009G135600--Sobic003G349300 Sobic009G146100 Sobic009G146100 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic002G400000 Sobic002G400000 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic003G370900--Sobic001G106700 Sobic003G370900--Sobic001G473300 Sobic003G370900--Sobic003G117900 Sobic001G181700 Sobic001G181700 Sobic003G370900--Sobic001G181700 Sobic003G370900--Sobic001G460600 Sobic007G058700 Sobic007G058700 Sobic003G370900--Sobic007G058700 Sobic004G235000 Sobic004G235000 Sobic003G370900--Sobic004G235000 Sobic003G370900--Sobic001G007200 Sobic009G165800 Sobic009G165800 Sobic003G370900--Sobic009G165800 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic010G042100 Sobic010G042100 Sobic003G117900--Sobic010G042100 Sobic003G117900--Sobic003G370900 Sobic003G117900--Sobic001G106700 Sobic001G329100 Sobic001G329100 Sobic003G117900--Sobic001G329100 Sobic003G117900--Sobic001G007200 Sobic004G167400 Sobic004G167400 Sobic003G117900--Sobic004G167400 Sobic004G067100 Sobic004G067100 Sobic003G117900--Sobic004G067100 Sobic002G045300 Sobic002G045300 Sobic003G117900--Sobic002G045300 Sobic010G253800 Sobic010G253800 Sobic003G117900--Sobic010G253800 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic004G289800--Sobic007G045600 Sobic004G289800--Sobic009G135600 Sobic004G289800--Sobic001G461900 Sobic010G188200 Sobic010G188200 Sobic004G289800--Sobic010G188200 Sobic004G289800--Sobic003G349300 Sobic004G289800--Sobic001G294900 Sobic006G263900 Sobic006G263900 Sobic004G289800--Sobic006G263900 Sobic004G289800--Sobic001G054200 Sobic004G289800--Sobic007G142500 Sobic003G323600--Sobic007G045600 Sobic007G019100 Sobic007G019100 Sobic003G323600--Sobic007G019100 Sobic006G232200 Sobic006G232200 Sobic003G323600--Sobic006G232200 Sobic001G459500 Sobic001G459500 Sobic003G323600--Sobic001G459500 Sobic003G367451 Sobic003G367451 Sobic003G323600--Sobic003G367451 Sobic003G323600--Sobic007G142500 Sobic001G132100 Sobic001G132100 Sobic003G323600--Sobic001G132100 Sobic001G236300 Sobic001G236300 Sobic003G323600--Sobic001G236300 Sobic001G048832 Sobic001G048832 Sobic003G323600--Sobic001G048832
Octagon: transcription factors


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