Gene annotation
| Transcriptome id | Sobic.001G357300.3 |
|---|---|
| Synonym | ATCYS1, CGS1, MTO1, Sb01g034130, CGS |
| Functional annotation | cystathionine gamma-synthase, putative, expressed |
| UniProt | A0A1Z5S9N0 |
| Pfam | PF01053 |
| Panther DB | PTHR11808 PTHR11808:SF14 |
| NCBI CDD | KOG0053; Cystathionine beta-lyases/cystathionine gamma-synthases |
| KEGG Orthology | K01739; cystathionine gamma-synthase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G01120 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g25940.4 : cystathionine gamma-synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a052050 , Zm00025a002657 |
| Brachypodium | KQK21516 |
| Barley | HORVU4Hr1G036280.1 , HORVU4Hr1G036280.3 , HORVU4Hr1G036280.2 , HORVU4Hr1G036280.5 , HORVU4Hr1G036280.4 , HORVU4Hr1G036280.7 , HORVU4Hr1G036280.6 , HORVU4Hr1G036280.9 , HORVU4Hr1G036280.8 , HORVU4Hr1G036280.11 , HORVU4Hr1G036280.10 |
| Wheat | TraesCS4D02G159500 , TraesCS4D02G159500 , TraesCS4B02G157700 , TraesCS4A02G159700 , TraesCS4A02G159700 |
| Populus | - |
JBrowse
| Sobic.001G357300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G363100 | eukaryotic translation initiation factor 5A, putative, expressed | K03263: translation initiation factor 5A |
| 2 | Sobic.005G133900 | TPR repeat region family protein, expressed | - |
| 3 | Sobic.004G057200 | cytoplasmic membrane protein, putative, expressed | - |
| 4 | Sobic.002G306900 | nucleoside diphosphate kinase, putative, expressed | K00940: ndk, nucleoside-diphosphate kinase |
| 5 | Sobic.010G277800 | lysM domain containing protein, putative, expressed | - |
| 6 | Sobic.009G217900 | expressed protein | K06875: PDCD5, programmed cell death protein 5 |
| 7 | Sobic.009G001400 | SNF7 domain containing protein, putative, expressed | K12198: CHMP5, charged multivesicular body protein 5 |
| 8 | Sobic.010G019300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, NUDIX family, domain containing protein, expressed | K18447: ADP-sugar diphosphatase |
| 9 | Sobic.009G240900 | ras-related protein, putative, expressed | K07936: GTP-binding nuclear protein Ran |
| 10 | Sobic.004G058200 | cytidylyltransferase domain containing protein, expressed | K00968: choline-phosphate cytidylyltransferase |
| 11 | Sobic.003G369500 | NPL4, putative, expressed | K14015: NPLOC4, nuclear protein localization protein 4 homolog |
| 12 | Sobic.007G137600 | NADP-dependent malate dehydrogenase(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 13 | Sobic.007G114200 | alpha-soluble NSF attachment protein, putative, expressed | K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein |
| 14 | Sobic.001G388600 | histidine triad family protein, putative, expressed | K02503: HINT1, hinT, histidine triad (HIT) family protein |
| 15 | Sobic.001G040800 | ADP-ribosylation factor, putative, expressed | K07937: ADP-ribosylation factor 1/2 K07977: Arf/Sar family, other |
| 16 | Sobic.010G165500 | ABC-2 type transporter, putative, expressed | - |
| 17 | Sobic.010G027000 | enolase, putative, expressed | K01689: ENO, enolase |
| 18 | Sobic.003G216500 | vacuolar ATP synthase, putative, expressed | K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit |
| 19 | Sobic.009G005900 | actin, putative, expressed | K10355: actin, other eukaryote |
| 20 | Sobic.010G232100 | Constitutively expressed genes(PubMedID : 24456189)@ubiquitin family protein, putative, expressed | K08770: ubiquitin C K08770: ubiquitin C K04551: ubiquitin B |
Gene co-expression network
Octagon: transcription factors
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