Gene annotation
Transcriptome id Sobic.004G058200.1
Synonym CCT1, Sb04g004880, ATCCT1
Functional annotation cytidylyltransferase domain containing protein, expressed
UniProt C5XW59
Pfam PF01467
Panther DB PTHR10739 PTHR10739:SF32
NCBI CDD KOG2804; Phosphorylcholine transferase/cholinephosphate cytidylyltransferase
KEGG Orthology K00968; choline-phosphate cytidylyltransferase
Gene Ontology GO:0009058; biosynthetic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G32260 : phosphorylcholine cytidylyltransferase
RAP-DB (Rice) LOC_Os02g07720.2 : cytidylyltransferase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019106
Brachypodium KQJ93568
Barley HORVU6Hr1G031590.8 , HORVU6Hr1G031590.9 , HORVU6Hr1G031590.6 , HORVU6Hr1G031590.7 , HORVU6Hr1G031590.4 , HORVU6Hr1G031590.5 , HORVU6Hr1G031590.2 , HORVU6Hr1G031590.3 , HORVU6Hr1G031590.1
Wheat TraesCS6B02G184100 , TraesCS6D02G146000 , TraesCS6A02G156000
Populus PNT54814 , PNT54815 , PNT54817 , PNT54818


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cDNA sequences
Sobic.004G058200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
2 Sobic.009G135900 cysteine proteinase inhibitor precursor protein, putative, expressed -
3 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
4 Sobic.001G358300 SNARE associated Golgi protein, putative, expressed -
5 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
6 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
7 Sobic.001G301800 CS domain containing protein, putative, expressed -
8 Sobic.003G395100 tetratricopeptide repeat protein 1, putative, expressed -
9 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
10 Sobic.003G336000 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed K15633: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
11 Sobic.010G027000 enolase, putative, expressed K01689: ENO, enolase
12 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
13 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
14 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
15 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
16 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
17 Sobic.010G205300 secreted salivary protein, putative, expressed -
18 Sobic.010G277800 lysM domain containing protein, putative, expressed -
19 Sobic.004G181900 expressed protein -
20 Sobic.007G197200 peptidyl-prolyl isomerase, putative, expressed K09571: FK506-binding protein 4/5


Gene co-expression network
sample Sobic004G058200 Sobic004G058200 Sobic010G188100 Sobic010G188100 Sobic004G058200--Sobic010G188100 Sobic009G135900 Sobic009G135900 Sobic004G058200--Sobic009G135900 Sobic007G114200 Sobic007G114200 Sobic004G058200--Sobic007G114200 Sobic001G358300 Sobic001G358300 Sobic004G058200--Sobic001G358300 Sobic009G217900 Sobic009G217900 Sobic004G058200--Sobic009G217900 Sobic002G363100 Sobic002G363100 Sobic004G058200--Sobic002G363100 Sobic001G301800 Sobic001G301800 Sobic004G058200--Sobic001G301800 Sobic003G395100 Sobic003G395100 Sobic004G058200--Sobic003G395100 Sobic001G328200 Sobic001G328200 Sobic004G058200--Sobic001G328200 Sobic001G220400 Sobic001G220400 Sobic010G188100--Sobic001G220400 Sobic009G219900 Sobic009G219900 Sobic010G188100--Sobic009G219900 Sobic010G101500 Sobic010G101500 Sobic010G188100--Sobic010G101500 Sobic003G367451 Sobic003G367451 Sobic010G188100--Sobic003G367451 Sobic003G077900 Sobic003G077900 Sobic010G188100--Sobic003G077900 Sobic009G001400 Sobic009G001400 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic002G166900 Sobic002G166900 Sobic010G188100--Sobic002G166900 Sobic001G283500 Sobic001G283500 Sobic010G188100--Sobic001G283500 Sobic009G135900--Sobic004G058200 Sobic004G255700 Sobic004G255700 Sobic009G135900--Sobic004G255700 Sobic005G033200 Sobic005G033200 Sobic009G135900--Sobic005G033200 Sobic003G350800 Sobic003G350800 Sobic009G135900--Sobic003G350800 Sobic009G135900--Sobic009G217900 Sobic009G135900--Sobic009G219900 Sobic004G247000 Sobic004G247000 Sobic009G135900--Sobic004G247000 Sobic003G369500 Sobic003G369500 Sobic009G135900--Sobic003G369500 Sobic009G135900--Sobic001G328200 Sobic007G045600 Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic004G327300 Sobic004G327300 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800 Sobic001G103200 Sobic001G103200 Sobic001G358300--Sobic001G103200 Sobic001G415000 Sobic001G415000 Sobic001G358300--Sobic001G415000 Sobic004G059900 Sobic004G059900 Sobic001G358300--Sobic004G059900 Sobic003G002400 Sobic003G002400 Sobic001G358300--Sobic003G002400 Sobic004G271700 Sobic004G271700 Sobic001G358300--Sobic004G271700 Sobic004G350300 Sobic004G350300 Sobic001G358300--Sobic004G350300 Sobic001G358300--Sobic004G058200 Sobic001G434900 Sobic001G434900 Sobic001G358300--Sobic001G434900 Sobic003G238000 Sobic003G238000 Sobic001G358300--Sobic003G238000 Sobic004G130100 Sobic004G130100 Sobic009G217900--Sobic004G130100 Sobic009G217900--Sobic002G363100 Sobic001G501200 Sobic001G501200 Sobic009G217900--Sobic001G501200 Sobic010G205300 Sobic010G205300 Sobic009G217900--Sobic010G205300 Sobic009G217900--Sobic005G033200 Sobic010G042100 Sobic010G042100 Sobic009G217900--Sobic010G042100 Sobic001G314500 Sobic001G314500 Sobic009G217900--Sobic001G314500 Sobic003G440800 Sobic003G440800 Sobic009G217900--Sobic003G440800 Sobic009G198500 Sobic009G198500 Sobic009G217900--Sobic009G198500 Sobic009G240900 Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic001G040800 Sobic001G040800 Sobic002G363100--Sobic001G040800 Sobic002G363100--Sobic009G001400 Sobic001G357300 Sobic001G357300 Sobic002G363100--Sobic001G357300 Sobic002G363100--Sobic007G114200 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic002G363100--Sobic004G130100 Sobic002G363100--Sobic004G327300 Sobic009G017800 Sobic009G017800 Sobic001G301800--Sobic009G017800 Sobic001G301800--Sobic004G058200 Sobic001G301800--Sobic009G217900 Sobic001G301800--Sobic009G135900 Sobic010G027000 Sobic010G027000 Sobic001G301800--Sobic010G027000 Sobic010G026925 Sobic010G026925 Sobic001G301800--Sobic010G026925 Sobic001G301800--Sobic005G033200 Sobic003G336000 Sobic003G336000 Sobic001G301800--Sobic003G336000 Sobic010G019300 Sobic010G019300 Sobic001G301800--Sobic010G019300 Sobic004G020000 Sobic004G020000 Sobic003G395100--Sobic004G020000 Sobic003G395100--Sobic003G002400 Sobic003G395100--Sobic004G058200 Sobic003G395100--Sobic001G358300 Sobic003G395100--Sobic010G188100 Sobic002G293300 Sobic002G293300 Sobic003G395100--Sobic002G293300 Sobic006G163000 Sobic006G163000 Sobic003G395100--Sobic006G163000 Sobic003G395100--Sobic001G103200 Sobic003G395100--Sobic002G166900 Sobic001G328200--Sobic010G188100 Sobic001G328200--Sobic009G219900 Sobic006G092400 Sobic006G092400 Sobic001G328200--Sobic006G092400 Sobic001G328200--Sobic010G101500 Sobic001G328200--Sobic003G002400 Sobic003G312200 Sobic003G312200 Sobic001G328200--Sobic003G312200 Sobic002G358800 Sobic002G358800 Sobic001G328200--Sobic002G358800 Sobic007G139700 Sobic007G139700 Sobic001G328200--Sobic007G139700 Sobic001G328200--Sobic002G166900
Octagon: transcription factors


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