Gene annotation
Transcriptome id Sobic.003G395100.1
Synonym
Functional annotation tetratricopeptide repeat protein 1, putative, expressed
UniProt A0A1B6Q7R4
Pfam PF13414
Panther DB PTHR22904 PTHR22904:SF356
NCBI CDD KOG4555; TPR repeat-containing protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30480 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g34540.1 : tetratricopeptide repeat protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a039416 , Zm00025a008544
Brachypodium KQJ91864 , KQJ91863
Barley -
Wheat TraesCS5A02G336700 , TraesCS5D02G341400 , TraesCS5B02G335700
Populus -


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cDNA sequences
Sobic.003G395100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G020000 translation initiation factor eIF3 subunit, putative, expressed K03245: translation initiation factor 3 subunit J
2 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
3 Sobic.004G058200 cytidylyltransferase domain containing protein, expressed K00968: choline-phosphate cytidylyltransferase
4 Sobic.001G358300 SNARE associated Golgi protein, putative, expressed -
5 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
6 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
7 Sobic.006G163000 src homology-3 domain protein 3, putative, expressed -
8 Sobic.001G103200 DNA binding protein, putative, expressed -
9 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
10 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
11 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
12 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
13 Sobic.004G350300 No apical meristem protein, putative, expressed -
14 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
15 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
16 Sobic.001G415000 expressed protein -
17 Sobic.004G247000 -(PubMedID : 26976818)@"Gln-4(Ortholog in maize:Martin et al., 2006)"(PubMedID : 31659887)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
18 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
19 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
20 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote


Gene co-expression network
sample Sobic003G395100 Sobic003G395100 Sobic004G020000 Sobic004G020000 Sobic003G395100--Sobic004G020000 Sobic003G002400 Sobic003G002400 Sobic003G395100--Sobic003G002400 Sobic004G058200 Sobic004G058200 Sobic003G395100--Sobic004G058200 Sobic001G358300 Sobic001G358300 Sobic003G395100--Sobic001G358300 Sobic010G188100 Sobic010G188100 Sobic003G395100--Sobic010G188100 Sobic002G293300 Sobic002G293300 Sobic003G395100--Sobic002G293300 Sobic006G163000 Sobic006G163000 Sobic003G395100--Sobic006G163000 Sobic001G103200 Sobic001G103200 Sobic003G395100--Sobic001G103200 Sobic002G166900 Sobic002G166900 Sobic003G395100--Sobic002G166900 Sobic005G034400 Sobic005G034400 Sobic004G020000--Sobic005G034400 Sobic003G220600 Sobic003G220600 Sobic004G020000--Sobic003G220600 Sobic002G045300 Sobic002G045300 Sobic004G020000--Sobic002G045300 Sobic002G083266 Sobic002G083266 Sobic004G020000--Sobic002G083266 Sobic001G440700 Sobic001G440700 Sobic004G020000--Sobic001G440700 Sobic010G042100 Sobic010G042100 Sobic004G020000--Sobic010G042100 Sobic006G264300 Sobic006G264300 Sobic004G020000--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic004G020000--Sobic001G415000 Sobic002G153500 Sobic002G153500 Sobic004G020000--Sobic002G153500 Sobic004G350300 Sobic004G350300 Sobic003G002400--Sobic004G350300 Sobic004G274400 Sobic004G274400 Sobic003G002400--Sobic004G274400 Sobic001G434900 Sobic001G434900 Sobic003G002400--Sobic001G434900 Sobic003G002400--Sobic002G045300 Sobic003G002400--Sobic003G220600 Sobic004G271700 Sobic004G271700 Sobic003G002400--Sobic004G271700 Sobic001G122500 Sobic001G122500 Sobic003G002400--Sobic001G122500 Sobic006G033200 Sobic006G033200 Sobic003G002400--Sobic006G033200 Sobic010G101500 Sobic010G101500 Sobic003G002400--Sobic010G101500 Sobic004G058200--Sobic010G188100 Sobic009G135900 Sobic009G135900 Sobic004G058200--Sobic009G135900 Sobic007G114200 Sobic007G114200 Sobic004G058200--Sobic007G114200 Sobic004G058200--Sobic001G358300 Sobic009G217900 Sobic009G217900 Sobic004G058200--Sobic009G217900 Sobic002G363100 Sobic002G363100 Sobic004G058200--Sobic002G363100 Sobic001G301800 Sobic001G301800 Sobic004G058200--Sobic001G301800 Sobic004G058200--Sobic003G395100 Sobic001G328200 Sobic001G328200 Sobic004G058200--Sobic001G328200 Sobic001G358300--Sobic001G103200 Sobic001G358300--Sobic001G415000 Sobic004G059900 Sobic004G059900 Sobic001G358300--Sobic004G059900 Sobic001G358300--Sobic003G002400 Sobic001G358300--Sobic004G271700 Sobic001G358300--Sobic004G350300 Sobic001G358300--Sobic004G058200 Sobic001G358300--Sobic001G434900 Sobic003G238000 Sobic003G238000 Sobic001G358300--Sobic003G238000 Sobic001G220400 Sobic001G220400 Sobic010G188100--Sobic001G220400 Sobic009G219900 Sobic009G219900 Sobic010G188100--Sobic009G219900 Sobic010G188100--Sobic010G101500 Sobic003G367451 Sobic003G367451 Sobic010G188100--Sobic003G367451 Sobic003G077900 Sobic003G077900 Sobic010G188100--Sobic003G077900 Sobic009G001400 Sobic009G001400 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic010G188100--Sobic002G166900 Sobic001G283500 Sobic001G283500 Sobic010G188100--Sobic001G283500 Sobic003G367300 Sobic003G367300 Sobic002G293300--Sobic003G367300 Sobic001G436000 Sobic001G436000 Sobic002G293300--Sobic001G436000 Sobic002G379400 Sobic002G379400 Sobic002G293300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G293300--Sobic010G052800 Sobic009G231200 Sobic009G231200 Sobic002G293300--Sobic009G231200 Sobic002G330300 Sobic002G330300 Sobic002G293300--Sobic002G330300 Sobic001G082900 Sobic001G082900 Sobic002G293300--Sobic001G082900 Sobic004G025000 Sobic004G025000 Sobic002G293300--Sobic004G025000 Sobic001G516100 Sobic001G516100 Sobic002G293300--Sobic001G516100 Sobic006G163000--Sobic001G220400 Sobic006G163000--Sobic002G045300 Sobic004G234900 Sobic004G234900 Sobic006G163000--Sobic004G234900 Sobic002G122700 Sobic002G122700 Sobic006G163000--Sobic002G122700 Sobic006G163000--Sobic003G220600 Sobic006G163000--Sobic010G101500 Sobic006G163000--Sobic004G271700 Sobic006G163000--Sobic009G219900 Sobic002G413000 Sobic002G413000 Sobic006G163000--Sobic002G413000 Sobic001G103200--Sobic001G516100 Sobic001G103200--Sobic001G358300 Sobic001G103200--Sobic004G271700 Sobic001G510700 Sobic001G510700 Sobic001G103200--Sobic001G510700 Sobic009G135100 Sobic009G135100 Sobic001G103200--Sobic009G135100 Sobic001G103200--Sobic009G219900 Sobic001G103200--Sobic004G350300 Sobic001G350900 Sobic001G350900 Sobic001G103200--Sobic001G350900 Sobic001G103200--Sobic003G002400 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic004G067100 Sobic004G067100 Sobic002G166900--Sobic004G067100 Sobic001G283200 Sobic001G283200 Sobic002G166900--Sobic001G283200 Sobic002G385900 Sobic002G385900 Sobic002G166900--Sobic002G385900 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic004G321900 Sobic004G321900 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic002G166900--Sobic001G220400
Octagon: transcription factors


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