Gene annotation
Transcriptome id Sobic.004G247000.3,Sobic.004G247000.4,Sobic.004G247000.1,Sobic.004G247000.2
Synonym ATGSR1, 1, ATGLN1, GLN1;1, GSR1, GSR 1 , GLN1, Sb04g028690, GSR 1 ; GLN1;1
Functional annotation - (PubMedID : 26976818)
"Gln-4(Ortholog in maize:Martin et al., 2006)" (PubMedID : 31659887)
glutamine synthetase, catalytic domain containing protein, expressed
UniProt A0A194YRJ6 , A0A194YRE9 , A0A194YSK5 , A0A194YRF0
Pfam PF00120 PF03951 PF03951 PF00120 PF00120
Panther DB PTHR20852 PTHR20852:SF59 PTHR20852:SF59 PTHR20852
NCBI CDD KOG0683; Glutamine synthetase
KEGG Orthology K01915; glnA, glutamine synthetase
Gene Ontology GO:0004356; glutamate-ammonia ligase activity GO:0006542glutamine biosynthetic process GO:0006807nitrogen compound metabolic process GO:0006807nitrogen compound metabolic process GO:0006542glutamine biosynthetic process GO:0004356glutamate-ammonia ligase activity GO:0006807nitrogen compound metabolic process GO:0004356glutamate-ammonia ligase activity


Orthologs (automatic annotation)
TAIR AT5G16570 : glutamine synthetase 1;4,glutamine synthase clone R1
RAP-DB (Rice) LOC_Os02g50240.1 : glutamine synthetase, catalytic domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001369 , Zm00025a032673 , Zm00025a007867 , Zm00025a053030 , Zm00025a021951
Brachypodium KQK22827 , KQK02034
Barley HORVU6Hr1G074030.2 , HORVU6Hr1G074030.3 , HORVU6Hr1G074030.1 , HORVU6Hr1G074030.4 , HORVU4Hr1G066860.4 , HORVU4Hr1G066860.5 , HORVU4Hr1G066860.6 , HORVU4Hr1G066860.7 , HORVU4Hr1G066860.1 , HORVU4Hr1G066860.2 , HORVU4Hr1G066860.3 , HORVU4Hr1G066860.8
Wheat TraesCS4B02G240900 , TraesCS4A02G266900 , TraesCS4A02G063800 , TraesCS4D02G240700 , TraesCS6A02G298100 , TraesCS6A02G298100 , TraesCS6B02G327500 , TraesCS6B02G327500 , TraesCS6B02G327500
Populus -


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cDNA sequences
Sobic.004G247000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
2 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
3 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
4 Sobic.003G076500 MYB family transcription factor, putative, expressed -
5 Sobic.009G135900 cysteine proteinase inhibitor precursor protein, putative, expressed -
6 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
7 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.010G205300 secreted salivary protein, putative, expressed -
9 Sobic.004G181900 expressed protein -
10 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
11 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
12 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
13 Sobic.004G232800 expressed protein -
14 Sobic.002G313800 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
16 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
17 Sobic.005G168600 NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
18 Sobic.003G010400 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
19 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
20 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin


Gene co-expression network
sample Sobic004G247000 Sobic004G247000 Sobic003G077900 Sobic003G077900 Sobic004G247000--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic004G247000--Sobic001G541100 Sobic009G005900 Sobic009G005900 Sobic004G247000--Sobic009G005900 Sobic003G076500 Sobic003G076500 Sobic004G247000--Sobic003G076500 Sobic009G135900 Sobic009G135900 Sobic004G247000--Sobic009G135900 Sobic001G070000 Sobic001G070000 Sobic004G247000--Sobic001G070000 Sobic002G400000 Sobic002G400000 Sobic004G247000--Sobic002G400000 Sobic010G205300 Sobic010G205300 Sobic004G247000--Sobic010G205300 Sobic004G181900 Sobic004G181900 Sobic004G247000--Sobic004G181900 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic009G219000 Sobic009G219000 Sobic001G541100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic001G541100--Sobic001G323000 Sobic001G541100--Sobic009G219900 Sobic009G138100 Sobic009G138100 Sobic001G541100--Sobic009G138100 Sobic006G209400 Sobic006G209400 Sobic001G541100--Sobic006G209400 Sobic001G395400 Sobic001G395400 Sobic001G541100--Sobic001G395400 Sobic010G130000 Sobic010G130000 Sobic001G541100--Sobic010G130000 Sobic001G105500 Sobic001G105500 Sobic001G541100--Sobic001G105500 Sobic002G134600 Sobic002G134600 Sobic001G541100--Sobic002G134600 Sobic009G174900 Sobic009G174900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic004G321900 Sobic004G321900 Sobic009G005900--Sobic004G321900 Sobic001G433400 Sobic001G433400 Sobic009G005900--Sobic001G433400 Sobic009G005900--Sobic002G400000 Sobic002G134001 Sobic002G134001 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic003G010400 Sobic003G010400 Sobic009G005900--Sobic003G010400 Sobic006G212100 Sobic006G212100 Sobic009G005900--Sobic006G212100 Sobic002G290400 Sobic002G290400 Sobic003G076500--Sobic002G290400 Sobic003G076500--Sobic006G209400 Sobic006G092400 Sobic006G092400 Sobic003G076500--Sobic006G092400 Sobic001G162100 Sobic001G162100 Sobic003G076500--Sobic001G162100 Sobic003G076500--Sobic010G130000 Sobic003G076500--Sobic001G541100 Sobic003G309200 Sobic003G309200 Sobic003G076500--Sobic003G309200 Sobic003G076500--Sobic009G219900 Sobic001G031600 Sobic001G031600 Sobic003G076500--Sobic001G031600 Sobic004G058200 Sobic004G058200 Sobic009G135900--Sobic004G058200 Sobic004G255700 Sobic004G255700 Sobic009G135900--Sobic004G255700 Sobic005G033200 Sobic005G033200 Sobic009G135900--Sobic005G033200 Sobic003G350800 Sobic003G350800 Sobic009G135900--Sobic003G350800 Sobic009G217900 Sobic009G217900 Sobic009G135900--Sobic009G217900 Sobic009G135900--Sobic009G219900 Sobic009G135900--Sobic004G247000 Sobic003G369500 Sobic003G369500 Sobic009G135900--Sobic003G369500 Sobic001G328200 Sobic001G328200 Sobic009G135900--Sobic001G328200 Sobic001G406100 Sobic001G406100 Sobic001G070000--Sobic001G406100 Sobic010G116400 Sobic010G116400 Sobic001G070000--Sobic010G116400 Sobic008G047400 Sobic008G047400 Sobic001G070000--Sobic008G047400 Sobic006G090500 Sobic006G090500 Sobic001G070000--Sobic006G090500 Sobic003G243600 Sobic003G243600 Sobic001G070000--Sobic003G243600 Sobic008G059100 Sobic008G059100 Sobic001G070000--Sobic008G059100 Sobic003G403700 Sobic003G403700 Sobic001G070000--Sobic003G403700 Sobic001G185500 Sobic001G185500 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic002G400000--Sobic007G168600 Sobic002G400000--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic002G400000--Sobic009G198500 Sobic002G400000--Sobic004G130900 Sobic002G400000--Sobic001G433400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic001G206900 Sobic001G206900 Sobic004G181900--Sobic001G206900 Sobic004G181900--Sobic003G349300 Sobic001G283200 Sobic001G283200 Sobic004G181900--Sobic001G283200 Sobic004G181900--Sobic010G205300 Sobic006G281800 Sobic006G281800 Sobic004G181900--Sobic006G281800 Sobic009G225000 Sobic009G225000 Sobic004G181900--Sobic009G225000 Sobic004G181900--Sobic004G348900 Sobic009G149500 Sobic009G149500 Sobic004G181900--Sobic009G149500 Sobic001G085100 Sobic001G085100 Sobic004G181900--Sobic001G085100
Octagon: transcription factors


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