Gene annotation
| Transcriptome id | Sobic.010G071800.1 |
|---|---|
| Synonym | ATCAD1, Sb10g006270, CAD;SbCAD4-5;SbCAD4-5, CAD1 |
| Functional annotation | "s cinnamyl alcohol dehydrogenases, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932) Cinnamyl alcohol dehydrogenase (PubMedID : 28606901) Cinnamyl alcohol dehydrogenase (PubMedID : 19087955) dehydrogenase, putative, expressed |
| UniProt | A0A194YHT5 |
| Pfam | PF00107 PF08240 |
| Panther DB | PTHR11695 PTHR11695:SF506 |
| NCBI CDD | KOG0023; Alcohol dehydrogenase, class V |
| KEGG Orthology | K00083; cinnamyl-alcohol dehydrogenase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0008270zinc ion binding |
Orthologs (automatic annotation)
| TAIR | AT1G72680 : cinnamyl-alcohol dehydrogenase |
|---|---|
| RAP-DB (Rice) | LOC_Os10g11810.1 : dehydrogenase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a009708 , Zm00025a049694 |
| Brachypodium | PNT67225 , PNT67227 , PNT67229 , PNT67226 , PNT67228 , KQJ96418 , KQJ96416 , KQJ96417 , PNT67230 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G355500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 2 | Sobic.008G167600 | VTC2, putative, expressed | - |
| 3 | Sobic.003G426900 | proline synthetase co-transcribed bacterial homolog protein, putative, expressed | K06997: yggS, PLP dependent protein |
| 4 | Sobic.003G428600 | amidohydrolase, putative, expressed | K07047: N-substituted formamide deformylase |
| 5 | Sobic.003G162400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 6 | Sobic.002G291800 | phosphate carrier protein, mitochondrial precursor, putative, expressed | K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3 |
| 7 | Sobic.003G440300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 8 | Sobic.003G425300 | Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed | K08101: phytochromobilin:ferredoxin oxidoreductase |
| 9 | Sobic.010G230500 | expressed protein | - |
| 10 | Sobic.003G080100 | Ser/Thr protein kinase, putative, expressed | - |
| 11 | Sobic.007G010800 | similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein | - |
| 12 | Sobic.006G257800 | actin-6, putative, expressed | K16616: actin-related protein 8, plant |
| 13 | Sobic.006G154800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 14 | Sobic.004G086300 | FAD binding domain of DNA photolyase domain containing protein, expressed | K02295: cryptochrome |
| 15 | Sobic.010G223200 | OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed | K03798: ftsH, cell division protease FtsH |
| 16 | Sobic.009G129800 | endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed | - |
| 17 | Sobic.004G189200 | OsFBK9 - F-box domain and kelch repeat containing protein, expressed | - |
| 18 | Sobic.009G040400 | WD domain, G-beta repeat domain containing protein, expressed | K11801: DDB1- and CUL4-associated factor 11 |
| 19 | Sobic.002G293500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed | - |
| 20 | Sobic.004G047300 | receptor-like protein kinase precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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