Gene annotation
Transcriptome id Sobic.004G086300.1
Synonym Sb04g007140, UVR3
Functional annotation FAD binding domain of DNA photolyase domain containing protein, expressed
UniProt C5XXX7
Pfam PF00875 PF03441
Panther DB PTHR11455 PTHR11455:SF9
NCBI CDD KOG0133; Deoxyribodipyrimidine photolyase/cryptochrome
KEGG Orthology K02295; cryptochrome
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15620 : DNA photolyase family protein
RAP-DB (Rice) LOC_Os02g10990.1 : FAD binding domain of DNA photolyase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019484 , Zm00025a019496
Brachypodium KQJ93948
Barley HORVU6Hr1G037460.1 , HORVU6Hr1G037460.2 , HORVU6Hr1G037460.3 , HORVU6Hr1G037460.4 , HORVU6Hr1G037460.5 , HORVU6Hr1G037460.6 , HORVU6Hr1G037460.7 , HORVU6Hr1G037460.8 , HORVU6Hr1G037460.9 , HORVU6Hr1G037460.12 , HORVU6Hr1G037460.13 , HORVU6Hr1G037460.10 , HORVU6Hr1G037460.11 , HORVU6Hr1G037460.14 , HORVU6Hr1G037460.15
Wheat TraesCS6A02G177000 , TraesCS6A02G177000 , TraesCS6D02G167100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G298200 dehydrogenase, putative, expressed -
2 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
4 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
5 Sobic.003G426900 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein
6 Sobic.003G277400 violaxanthin de-epoxidase, putative, expressed -
7 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
8 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
9 Sobic.010G150100 expressed protein -
10 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
11 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
12 Sobic.004G206100 transmembrane protein 17, putative, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
13 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
14 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
15 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
16 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
17 Sobic.004G154700 choline/ethanolamine kinase, putative, expressed -
18 Sobic.003G105900 expressed protein -
19 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
20 Sobic.009G103000 ubiquitin family protein, putative, expressed -


Gene co-expression network
sample Sobic004G086300 Sobic004G086300 Sobic003G298200 Sobic003G298200 Sobic004G086300--Sobic003G298200 Sobic003G150500 Sobic003G150500 Sobic004G086300--Sobic003G150500 Sobic007G010800 Sobic007G010800 Sobic004G086300--Sobic007G010800 Sobic003G428600 Sobic003G428600 Sobic004G086300--Sobic003G428600 Sobic003G426900 Sobic003G426900 Sobic004G086300--Sobic003G426900 Sobic003G277400 Sobic003G277400 Sobic004G086300--Sobic003G277400 Sobic002G295100 Sobic002G295100 Sobic004G086300--Sobic002G295100 Sobic001G331600 Sobic001G331600 Sobic004G086300--Sobic001G331600 Sobic010G150100 Sobic010G150100 Sobic004G086300--Sobic010G150100 Sobic003G298200--Sobic010G150100 Sobic003G298200--Sobic004G086300 Sobic003G298200--Sobic003G150500 Sobic003G107500 Sobic003G107500 Sobic003G298200--Sobic003G107500 Sobic003G105900 Sobic003G105900 Sobic003G298200--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic003G298200--Sobic005G201000 Sobic009G040400 Sobic009G040400 Sobic003G298200--Sobic009G040400 Sobic002G043800 Sobic002G043800 Sobic003G298200--Sobic002G043800 Sobic009G103000 Sobic009G103000 Sobic003G298200--Sobic009G103000 Sobic003G150500--Sobic002G043800 Sobic003G150500--Sobic003G298200 Sobic003G150500--Sobic003G107500 Sobic003G150500--Sobic010G150100 Sobic001G282800 Sobic001G282800 Sobic003G150500--Sobic001G282800 Sobic001G411200 Sobic001G411200 Sobic003G150500--Sobic001G411200 Sobic005G176100 Sobic005G176100 Sobic003G150500--Sobic005G176100 Sobic004G151300 Sobic004G151300 Sobic003G150500--Sobic004G151300 Sobic003G150500--Sobic004G086300 Sobic002G356900 Sobic002G356900 Sobic007G010800--Sobic002G356900 Sobic001G018000 Sobic001G018000 Sobic007G010800--Sobic001G018000 Sobic010G100900 Sobic010G100900 Sobic007G010800--Sobic010G100900 Sobic007G010800--Sobic009G040400 Sobic002G351200 Sobic002G351200 Sobic007G010800--Sobic002G351200 Sobic003G003450 Sobic003G003450 Sobic007G010800--Sobic003G003450 Sobic004G268400 Sobic004G268400 Sobic007G010800--Sobic004G268400 Sobic004G317700 Sobic004G317700 Sobic007G010800--Sobic004G317700 Sobic003G186800 Sobic003G186800 Sobic007G010800--Sobic003G186800 Sobic003G304300 Sobic003G304300 Sobic003G428600--Sobic003G304300 Sobic010G101000 Sobic010G101000 Sobic003G428600--Sobic010G101000 Sobic003G428600--Sobic003G186800 Sobic010G104700 Sobic010G104700 Sobic003G428600--Sobic010G104700 Sobic003G428600--Sobic002G351200 Sobic009G225600 Sobic009G225600 Sobic003G428600--Sobic009G225600 Sobic003G428600--Sobic001G018000 Sobic001G112900 Sobic001G112900 Sobic003G428600--Sobic001G112900 Sobic003G428600--Sobic004G268400 Sobic003G426900--Sobic003G428600 Sobic003G426900--Sobic002G351200 Sobic002G213400 Sobic002G213400 Sobic003G426900--Sobic002G213400 Sobic003G426900--Sobic001G018000 Sobic003G426900--Sobic007G010800 Sobic003G426900--Sobic010G101000 Sobic003G426900--Sobic001G112900 Sobic010G113200 Sobic010G113200 Sobic003G426900--Sobic010G113200 Sobic003G426900--Sobic003G304300 Sobic003G277400--Sobic007G010800 Sobic003G277400--Sobic009G040400 Sobic004G154700 Sobic004G154700 Sobic003G277400--Sobic004G154700 Sobic002G258400 Sobic002G258400 Sobic003G277400--Sobic002G258400 Sobic004G154800 Sobic004G154800 Sobic003G277400--Sobic004G154800 Sobic001G220000 Sobic001G220000 Sobic003G277400--Sobic001G220000 Sobic003G185600 Sobic003G185600 Sobic003G277400--Sobic003G185600 Sobic006G108200 Sobic006G108200 Sobic003G277400--Sobic006G108200 Sobic003G277400--Sobic002G356900 Sobic004G323400 Sobic004G323400 Sobic002G295100--Sobic004G323400 Sobic002G295100--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic002G295100--Sobic001G485100 Sobic002G293500 Sobic002G293500 Sobic002G295100--Sobic002G293500 Sobic004G312600 Sobic004G312600 Sobic002G295100--Sobic004G312600 Sobic001G046000 Sobic001G046000 Sobic002G295100--Sobic001G046000 Sobic002G295100--Sobic009G225600 Sobic006G257800 Sobic006G257800 Sobic002G295100--Sobic006G257800 Sobic003G162400 Sobic003G162400 Sobic002G295100--Sobic003G162400 Sobic001G331600--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic001G331600--Sobic004G128900 Sobic004G153900 Sobic004G153900 Sobic001G331600--Sobic004G153900 Sobic002G161400 Sobic002G161400 Sobic001G331600--Sobic002G161400 Sobic001G331600--Sobic001G046000 Sobic001G331600--Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic001G331600--Sobic007G227100 Sobic006G191500 Sobic006G191500 Sobic001G331600--Sobic006G191500 Sobic004G344600 Sobic004G344600 Sobic001G331600--Sobic004G344600 Sobic010G150100--Sobic004G151300 Sobic010G150100--Sobic004G312600 Sobic010G150100--Sobic001G331600 Sobic001G345100 Sobic001G345100 Sobic010G150100--Sobic001G345100 Sobic004G143300 Sobic004G143300 Sobic010G150100--Sobic004G143300 Sobic004G127800 Sobic004G127800 Sobic010G150100--Sobic004G127800 Sobic010G150100--Sobic002G043800 Sobic010G150100--Sobic007G227100 Sobic010G150100--Sobic003G003450
Octagon: transcription factors


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