Gene annotation
Transcriptome id Sobic.004G206100.3
Synonym Sb04g025190
Functional annotation transmembrane protein 17, putative, expressed
UniProt C5XX59
Pfam PF04979
Panther DB PTHR12398 PTHR12398:SF24
NCBI CDD -
KEGG Orthology K16833; PPP1R2, protein phosphatase inhibitor 2
Gene Ontology GO:0009966; regulation of signal transduction GO:0004864protein phosphatase inhibitor activity


Orthologs (automatic annotation)
TAIR AT5G52200 : phosphoprotein phosphatase inhibitors
RAP-DB (Rice) LOC_Os02g39030.1 : transmembrane protein 17, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
2 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
3 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
4 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
5 Sobic.007G181400 TraB family protein, putative, expressed -
6 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
7 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
8 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
9 Sobic.006G066800 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
10 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
11 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
12 Sobic.010G047700 starch synthase, putative, expressed K00703: starch synthase
13 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
14 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
15 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
16 Sobic.008G149100 B3 DNA binding domain containing protein, expressed -
17 Sobic.003G003450 - K01177: beta-amylase
18 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
19 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
20 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -


Gene co-expression network
sample Sobic004G206100 Sobic004G206100 Sobic001G015200 Sobic001G015200 Sobic004G206100--Sobic001G015200 Sobic001G436400 Sobic001G436400 Sobic004G206100--Sobic001G436400 Sobic007G166300 Sobic007G166300 Sobic004G206100--Sobic007G166300 Sobic008G088821 Sobic008G088821 Sobic004G206100--Sobic008G088821 Sobic007G181400 Sobic007G181400 Sobic004G206100--Sobic007G181400 Sobic005G028800 Sobic005G028800 Sobic004G206100--Sobic005G028800 Sobic004G305900 Sobic004G305900 Sobic004G206100--Sobic004G305900 Sobic009G119300 Sobic009G119300 Sobic004G206100--Sobic009G119300 Sobic006G066800 Sobic006G066800 Sobic004G206100--Sobic006G066800 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic004G103300 Sobic004G103300 Sobic001G436400--Sobic004G103300 Sobic001G436400--Sobic005G028800 Sobic001G436400--Sobic007G166300 Sobic007G108900 Sobic007G108900 Sobic001G436400--Sobic007G108900 Sobic001G436400--Sobic001G509200 Sobic001G436400--Sobic001G015200 Sobic001G436400--Sobic001G393300 Sobic004G124400 Sobic004G124400 Sobic001G436400--Sobic004G124400 Sobic002G298800 Sobic002G298800 Sobic001G436400--Sobic002G298800 Sobic007G166300--Sobic005G028800 Sobic007G166300--Sobic001G393300 Sobic007G166300--Sobic004G103300 Sobic007G166300--Sobic001G509200 Sobic007G166300--Sobic001G015200 Sobic007G124500 Sobic007G124500 Sobic007G166300--Sobic007G124500 Sobic007G135800 Sobic007G135800 Sobic007G166300--Sobic007G135800 Sobic007G166300--Sobic007G108900 Sobic007G166300--Sobic002G298800 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic004G028300 Sobic004G028300 Sobic008G088821--Sobic004G028300 Sobic008G088821--Sobic009G119300 Sobic008G088821--Sobic003G103300 Sobic001G018000 Sobic001G018000 Sobic008G088821--Sobic001G018000 Sobic004G268400 Sobic004G268400 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic007G181400--Sobic001G015200 Sobic003G419900 Sobic003G419900 Sobic007G181400--Sobic003G419900 Sobic004G359600 Sobic004G359600 Sobic007G181400--Sobic004G359600 Sobic004G202200 Sobic004G202200 Sobic007G181400--Sobic004G202200 Sobic002G275300 Sobic002G275300 Sobic007G181400--Sobic002G275300 Sobic001G289500 Sobic001G289500 Sobic007G181400--Sobic001G289500 Sobic001G491000 Sobic001G491000 Sobic007G181400--Sobic001G491000 Sobic006G238200 Sobic006G238200 Sobic007G181400--Sobic006G238200 Sobic007G181400--Sobic008G088821 Sobic005G028800--Sobic007G166300 Sobic005G028800--Sobic004G103300 Sobic005G028800--Sobic001G509200 Sobic005G028800--Sobic004G124400 Sobic005G028800--Sobic001G015200 Sobic005G028800--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic005G028800--Sobic010G231500 Sobic005G028800--Sobic001G393300 Sobic005G028800--Sobic007G124500 Sobic004G305900--Sobic001G015200 Sobic004G305900--Sobic008G088821 Sobic004G305900--Sobic003G103300 Sobic004G305900--Sobic005G028800 Sobic004G305900--Sobic006G140500 Sobic001G167900 Sobic001G167900 Sobic004G305900--Sobic001G167900 Sobic004G305900--Sobic007G166300 Sobic004G305900--Sobic010G101000 Sobic004G305900--Sobic004G028300 Sobic009G119300--Sobic008G088821 Sobic009G119300--Sobic001G015200 Sobic009G119300--Sobic010G101000 Sobic009G119300--Sobic006G140500 Sobic003G186800 Sobic003G186800 Sobic009G119300--Sobic003G186800 Sobic009G119300--Sobic004G268400 Sobic009G119300--Sobic001G018000 Sobic009G119300--Sobic003G103300 Sobic004G267700 Sobic004G267700 Sobic009G119300--Sobic004G267700 Sobic002G322000 Sobic002G322000 Sobic006G066800--Sobic002G322000 Sobic010G047700 Sobic010G047700 Sobic006G066800--Sobic010G047700 Sobic006G066800--Sobic004G206100 Sobic004G269800 Sobic004G269800 Sobic006G066800--Sobic004G269800 Sobic006G066800--Sobic001G015200 Sobic006G066800--Sobic008G088821 Sobic006G066800--Sobic006G140500 Sobic006G066800--Sobic004G305900 Sobic002G159100 Sobic002G159100 Sobic006G066800--Sobic002G159100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.