Gene annotation
Transcriptome id Sobic.003G440300.2,Sobic.003G440300.1
Synonym Sb03g047000
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0W1M2 , C5XJA3
Pfam -
Panther DB PTHR34213 PTHR34213:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04830 : Nuclear transport factor 2 (NTF2) family protein
RAP-DB (Rice) LOC_Os01g73500.1 : expressed protein
MaizeGDB (Corn) Zm00025a039062
Brachypodium KQK11704
Barley HORVU3Hr1G113020.1 , HORVU3Hr1G113020.2 , HORVU3Hr1G113020.3 , HORVU3Hr1G113020.4
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CPuORF19 - conserved peptide uORF-containing transcript, expressed -
2 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G326000 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
4 Sobic.003G188200 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
5 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
6 Sobic.001G112900 expressed protein -
7 Sobic.005G002400 expressed protein -
8 Sobic.006G154800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
10 Sobic.006G041000 "Oxidoreductase, zinc-binding dehydrogenase family protein"("PubMedID : 26759170,PubMedID : 24597475")@dehydrogenase, putative, expressed -
11 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G052100 early light-induced protein, chloroplast precursor, putative, expressed -
13 Sobic.010G271800 leucine zipper protein-like, putative, expressed -
14 Sobic.001G181100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@SCARECROW, putative, expressed -
15 Sobic.010G223200 OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed K03798: ftsH, cell division protease FtsH
16 Sobic.008G002400 expressed protein -
17 Sobic.002G052000 early light-induced protein, chloroplast precursor, putative, expressed -
18 Sobic.010G113200 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed -
19 Sobic.004G214800 receptor-like protein kinase 5 precursor, putative, expressed -
20 Sobic.003G426900 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein


Gene co-expression network
sample Sobic003G440300 Sobic003G440300 Sobic004G190100 Sobic004G190100 Sobic003G440300--Sobic004G190100 Sobic003G162400 Sobic003G162400 Sobic003G440300--Sobic003G162400 Sobic003G326000 Sobic003G326000 Sobic003G440300--Sobic003G326000 Sobic003G188200 Sobic003G188200 Sobic003G440300--Sobic003G188200 Sobic002G291800 Sobic002G291800 Sobic003G440300--Sobic002G291800 Sobic001G112900 Sobic001G112900 Sobic003G440300--Sobic001G112900 Sobic005G002400 Sobic005G002400 Sobic003G440300--Sobic005G002400 Sobic006G154800 Sobic006G154800 Sobic003G440300--Sobic006G154800 Sobic004G323400 Sobic004G323400 Sobic003G440300--Sobic004G323400 Sobic004G190100--Sobic005G002400 Sobic004G190100--Sobic003G440300 Sobic004G190100--Sobic003G326000 Sobic008G002400 Sobic008G002400 Sobic004G190100--Sobic008G002400 Sobic004G190100--Sobic001G112900 Sobic010G271800 Sobic010G271800 Sobic004G190100--Sobic010G271800 Sobic010G223200 Sobic010G223200 Sobic004G190100--Sobic010G223200 Sobic004G190100--Sobic003G162400 Sobic004G190100--Sobic006G154800 Sobic003G162400--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic003G162400--Sobic003G339200 Sobic004G344600 Sobic004G344600 Sobic003G162400--Sobic004G344600 Sobic003G162400--Sobic005G002400 Sobic010G113200 Sobic010G113200 Sobic003G162400--Sobic010G113200 Sobic002G161400 Sobic002G161400 Sobic003G162400--Sobic002G161400 Sobic003G162400--Sobic003G326000 Sobic003G162400--Sobic003G440300 Sobic003G304300 Sobic003G304300 Sobic003G162400--Sobic003G304300 Sobic003G326000--Sobic010G271800 Sobic003G326000--Sobic005G002400 Sobic004G214800 Sobic004G214800 Sobic003G326000--Sobic004G214800 Sobic003G326000--Sobic008G002400 Sobic001G181100 Sobic001G181100 Sobic003G326000--Sobic001G181100 Sobic002G052100 Sobic002G052100 Sobic003G326000--Sobic002G052100 Sobic003G326000--Sobic004G190100 Sobic003G326000--Sobic001G112900 Sobic003G326000--Sobic006G154800 Sobic002G052000 Sobic002G052000 Sobic003G188200--Sobic002G052000 Sobic003G188200--Sobic002G052100 Sobic003G188200--Sobic003G440300 Sobic003G188200--Sobic003G326000 Sobic003G188200--Sobic005G002400 Sobic003G188200--Sobic001G181100 Sobic003G188200--Sobic004G190100 Sobic003G188200--Sobic004G323400 Sobic003G188200--Sobic008G002400 Sobic002G291800--Sobic010G223200 Sobic008G167600 Sobic008G167600 Sobic002G291800--Sobic008G167600 Sobic002G291800--Sobic003G162400 Sobic006G235300 Sobic006G235300 Sobic002G291800--Sobic006G235300 Sobic002G291800--Sobic003G440300 Sobic004G127800 Sobic004G127800 Sobic002G291800--Sobic004G127800 Sobic002G291800--Sobic004G190100 Sobic002G275100 Sobic002G275100 Sobic002G291800--Sobic002G275100 Sobic002G291800--Sobic001G112900 Sobic001G112900--Sobic003G339200 Sobic001G112900--Sobic004G344600 Sobic001G112900--Sobic003G304300 Sobic001G112900--Sobic002G161400 Sobic001G112900--Sobic010G113200 Sobic001G112900--Sobic005G002400 Sobic006G191500 Sobic006G191500 Sobic001G112900--Sobic006G191500 Sobic001G112900--Sobic003G162400 Sobic010G104700 Sobic010G104700 Sobic001G112900--Sobic010G104700 Sobic005G002400--Sobic008G002400 Sobic005G002400--Sobic003G326000 Sobic005G002400--Sobic001G112900 Sobic005G002400--Sobic001G181100 Sobic005G002400--Sobic002G052100 Sobic005G002400--Sobic004G190100 Sobic005G002400--Sobic010G271800 Sobic006G020300 Sobic006G020300 Sobic005G002400--Sobic006G020300 Sobic003G154400 Sobic003G154400 Sobic005G002400--Sobic003G154400 Sobic006G154800--Sobic003G326000 Sobic006G154800--Sobic010G271800 Sobic006G154800--Sobic004G190100 Sobic006G154800--Sobic005G002400 Sobic006G154800--Sobic003G440300 Sobic006G154800--Sobic008G002400 Sobic006G154800--Sobic001G112900 Sobic004G217500 Sobic004G217500 Sobic006G154800--Sobic004G217500 Sobic006G154800--Sobic010G113200 Sobic002G417300 Sobic002G417300 Sobic004G323400--Sobic002G417300 Sobic002G295100 Sobic002G295100 Sobic004G323400--Sobic002G295100 Sobic004G323400--Sobic003G188200 Sobic001G104900 Sobic001G104900 Sobic004G323400--Sobic001G104900 Sobic004G323400--Sobic003G440300 Sobic003G425300 Sobic003G425300 Sobic004G323400--Sobic003G425300 Sobic006G041000 Sobic006G041000 Sobic004G323400--Sobic006G041000 Sobic004G282900 Sobic004G282900 Sobic004G323400--Sobic004G282900 Sobic004G323400--Sobic002G291800
Octagon: transcription factors


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