Gene annotation
Transcriptome id Sobic.002G052000.2
Synonym Sb02g004380, ELIP1, ELIP
Functional annotation early light-induced protein, chloroplast precursor, putative, expressed
UniProt A0A1W0W2F4
Pfam PF00504
Panther DB PTHR14154 PTHR14154:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22840 : Chlorophyll A-B binding family protein
RAP-DB (Rice) LOC_Os07g08160.1 : early light-induced protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045165 , Zm00025a045164 , Zm00025a016085
Brachypodium KQK20605 , KQK20603 , KQK20611 , KQK20610
Barley HORVU1Hr1G087740.5 , HORVU1Hr1G087740.4 , HORVU1Hr1G087740.7 , HORVU1Hr1G087740.6 , HORVU1Hr1G087740.1 , HORVU1Hr1G087740.3 , HORVU1Hr1G087740.2 , HORVU1Hr1G087740.8 , HORVU5Hr1G063620.1 , HORVU5Hr1G063570.1 , HORVU5Hr1G063570.2
Wheat TraesCS5A02G219600 , TraesCS5A02G219500
Populus -


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cDNA sequences
Sobic.002G052000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G052100 early light-induced protein, chloroplast precursor, putative, expressed -
2 Sobic.001G181100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@SCARECROW, putative, expressed -
3 Sobic.003G188200 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
4 Sobic.003G175800 - -
5 Sobic.003G154400 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
6 Sobic.004G214800 receptor-like protein kinase 5 precursor, putative, expressed -
7 Sobic.005G002400 expressed protein -
8 Sobic.007G163433 - -
9 Sobic.010G271800 leucine zipper protein-like, putative, expressed -
10 Sobic.003G326000 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
11 Sobic.003G340350 - -
12 Sobic.006G020300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
13 Sobic.004G282900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
14 Sobic.004G206800 - -
15 Sobic.002G338800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
16 Sobic.009G245000 Glucose-1-phosphate adenylyltransferase large subunit(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
17 Sobic.001G104900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@peptidase, M50 family, putative, expressed -
18 Sobic.003G440300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.008G002400 expressed protein -
20 Sobic.004G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CPuORF19 - conserved peptide uORF-containing transcript, expressed -


Gene co-expression network
sample Sobic002G052000 Sobic002G052000 Sobic002G052100 Sobic002G052100 Sobic002G052000--Sobic002G052100 Sobic001G181100 Sobic001G181100 Sobic002G052000--Sobic001G181100 Sobic003G188200 Sobic003G188200 Sobic002G052000--Sobic003G188200 Sobic003G175800 Sobic003G175800 Sobic002G052000--Sobic003G175800 Sobic003G154400 Sobic003G154400 Sobic002G052000--Sobic003G154400 Sobic004G214800 Sobic004G214800 Sobic002G052000--Sobic004G214800 Sobic005G002400 Sobic005G002400 Sobic002G052000--Sobic005G002400 Sobic007G163433 Sobic007G163433 Sobic002G052000--Sobic007G163433 Sobic010G271800 Sobic010G271800 Sobic002G052000--Sobic010G271800 Sobic002G052100--Sobic002G052000 Sobic002G052100--Sobic001G181100 Sobic002G052100--Sobic004G214800 Sobic002G052100--Sobic005G002400 Sobic002G052100--Sobic003G175800 Sobic002G052100--Sobic003G154400 Sobic006G020300 Sobic006G020300 Sobic002G052100--Sobic006G020300 Sobic003G326000 Sobic003G326000 Sobic002G052100--Sobic003G326000 Sobic002G052100--Sobic010G271800 Sobic001G181100--Sobic002G052100 Sobic001G181100--Sobic005G002400 Sobic001G181100--Sobic003G326000 Sobic001G181100--Sobic010G271800 Sobic001G181100--Sobic004G214800 Sobic001G181100--Sobic002G052000 Sobic001G181100--Sobic003G175800 Sobic008G002400 Sobic008G002400 Sobic001G181100--Sobic008G002400 Sobic001G181100--Sobic006G020300 Sobic003G188200--Sobic002G052000 Sobic003G188200--Sobic002G052100 Sobic003G440300 Sobic003G440300 Sobic003G188200--Sobic003G440300 Sobic003G188200--Sobic003G326000 Sobic003G188200--Sobic005G002400 Sobic003G188200--Sobic001G181100 Sobic004G190100 Sobic004G190100 Sobic003G188200--Sobic004G190100 Sobic004G323400 Sobic004G323400 Sobic003G188200--Sobic004G323400 Sobic003G188200--Sobic008G002400 Sobic003G175800--Sobic002G052100 Sobic003G175800--Sobic006G020300 Sobic003G175800--Sobic001G181100 Sobic003G175800--Sobic005G002400 Sobic003G175800--Sobic003G154400 Sobic003G175800--Sobic002G052000 Sobic003G175800--Sobic008G002400 Sobic001G181000 Sobic001G181000 Sobic003G175800--Sobic001G181000 Sobic003G175800--Sobic004G214800 Sobic003G154400--Sobic002G052100 Sobic003G154400--Sobic005G002400 Sobic003G154400--Sobic006G020300 Sobic007G016600 Sobic007G016600 Sobic003G154400--Sobic007G016600 Sobic003G154400--Sobic003G175800 Sobic003G154400--Sobic002G052000 Sobic003G154400--Sobic008G002400 Sobic003G154400--Sobic001G181100 Sobic003G154400--Sobic004G214800 Sobic004G214800--Sobic003G326000 Sobic004G214800--Sobic002G052100 Sobic004G214800--Sobic001G181100 Sobic004G214800--Sobic010G271800 Sobic004G214800--Sobic005G002400 Sobic001G112900 Sobic001G112900 Sobic004G214800--Sobic001G112900 Sobic004G214800--Sobic006G020300 Sobic003G339200 Sobic003G339200 Sobic004G214800--Sobic003G339200 Sobic004G214800--Sobic003G175800 Sobic005G002400--Sobic008G002400 Sobic005G002400--Sobic003G326000 Sobic005G002400--Sobic001G112900 Sobic005G002400--Sobic001G181100 Sobic005G002400--Sobic002G052100 Sobic005G002400--Sobic004G190100 Sobic005G002400--Sobic010G271800 Sobic005G002400--Sobic006G020300 Sobic005G002400--Sobic003G154400 Sobic003G340350 Sobic003G340350 Sobic007G163433--Sobic003G340350 Sobic004G206800 Sobic004G206800 Sobic007G163433--Sobic004G206800 Sobic002G021900 Sobic002G021900 Sobic007G163433--Sobic002G021900 Sobic008G012100 Sobic008G012100 Sobic007G163433--Sobic008G012100 Sobic007G163433--Sobic002G052100 Sobic009G180550 Sobic009G180550 Sobic007G163433--Sobic009G180550 Sobic007G163433--Sobic002G052000 Sobic002G109200 Sobic002G109200 Sobic007G163433--Sobic002G109200 Sobic010G208750 Sobic010G208750 Sobic007G163433--Sobic010G208750 Sobic010G271800--Sobic003G326000 Sobic010G271800--Sobic001G181100 Sobic010G271800--Sobic005G002400 Sobic010G271800--Sobic002G052100 Sobic010G271800--Sobic004G214800 Sobic010G271800--Sobic008G002400 Sobic006G154800 Sobic006G154800 Sobic010G271800--Sobic006G154800 Sobic010G271800--Sobic004G190100 Sobic010G271800--Sobic001G112900
Octagon: transcription factors


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