Gene annotation
Transcriptome id Sobic.002G338800.1
Synonym Sb02g036340
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
dynein light chain type 1 domain containing protein, expressed
UniProt C5XBJ7
Pfam PF01221
Panther DB PTHR11886 PTHR11886:SF22
NCBI CDD KOG3430; Dynein light chain type 1
KEGG Orthology K10418; dynein light chain LC8-type
Gene Ontology GO:0007017; microtubule-based process GO:0005875microtubule associated complex


Orthologs (automatic annotation)
TAIR AT4G27360 : Dynein light chain type 1 family protein
RAP-DB (Rice) LOC_Os01g55510.1 : dynein light chain type 1 domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G112900 expressed protein -
2 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G304300 expressed protein -
4 Sobic.009G245000 Glucose-1-phosphate adenylyltransferase large subunit(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
5 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
6 Sobic.005G002400 expressed protein -
7 Sobic.007G016600 expressed protein -
8 Sobic.003G154400 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
9 Sobic.004G214800 receptor-like protein kinase 5 precursor, putative, expressed -
10 Sobic.010G113200 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed -
11 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
12 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.003G326000 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
14 Sobic.001G104900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@peptidase, M50 family, putative, expressed -
15 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.002G052100 early light-induced protein, chloroplast precursor, putative, expressed -
17 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
18 Sobic.008G002400 expressed protein -
19 Sobic.002G052000 early light-induced protein, chloroplast precursor, putative, expressed -
20 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G338800 Sobic002G338800 Sobic001G112900 Sobic001G112900 Sobic002G338800--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic002G338800--Sobic003G339200 Sobic003G304300 Sobic003G304300 Sobic002G338800--Sobic003G304300 Sobic009G245000 Sobic009G245000 Sobic002G338800--Sobic009G245000 Sobic003G186800 Sobic003G186800 Sobic002G338800--Sobic003G186800 Sobic005G002400 Sobic005G002400 Sobic002G338800--Sobic005G002400 Sobic007G016600 Sobic007G016600 Sobic002G338800--Sobic007G016600 Sobic003G154400 Sobic003G154400 Sobic002G338800--Sobic003G154400 Sobic004G214800 Sobic004G214800 Sobic002G338800--Sobic004G214800 Sobic001G112900--Sobic003G339200 Sobic004G344600 Sobic004G344600 Sobic001G112900--Sobic004G344600 Sobic001G112900--Sobic003G304300 Sobic002G161400 Sobic002G161400 Sobic001G112900--Sobic002G161400 Sobic010G113200 Sobic010G113200 Sobic001G112900--Sobic010G113200 Sobic001G112900--Sobic005G002400 Sobic006G191500 Sobic006G191500 Sobic001G112900--Sobic006G191500 Sobic003G162400 Sobic003G162400 Sobic001G112900--Sobic003G162400 Sobic010G104700 Sobic010G104700 Sobic001G112900--Sobic010G104700 Sobic003G339200--Sobic001G112900 Sobic003G339200--Sobic004G344600 Sobic003G339200--Sobic002G161400 Sobic003G339200--Sobic003G304300 Sobic003G339200--Sobic010G113200 Sobic009G246400 Sobic009G246400 Sobic003G339200--Sobic009G246400 Sobic003G339200--Sobic003G162400 Sobic003G339200--Sobic006G191500 Sobic003G339200--Sobic010G104700 Sobic004G267700 Sobic004G267700 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic002G351200 Sobic002G351200 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic003G304300--Sobic004G344600 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G380200 Sobic003G380200 Sobic003G304300--Sobic003G380200 Sobic004G268400 Sobic004G268400 Sobic003G304300--Sobic004G268400 Sobic009G245000--Sobic002G338800 Sobic009G245000--Sobic005G002400 Sobic003G326000 Sobic003G326000 Sobic009G245000--Sobic003G326000 Sobic008G002400 Sobic008G002400 Sobic009G245000--Sobic008G002400 Sobic002G213400 Sobic002G213400 Sobic009G245000--Sobic002G213400 Sobic001G104900 Sobic001G104900 Sobic009G245000--Sobic001G104900 Sobic001G018000 Sobic001G018000 Sobic009G245000--Sobic001G018000 Sobic002G052000 Sobic002G052000 Sobic009G245000--Sobic002G052000 Sobic006G020300 Sobic006G020300 Sobic009G245000--Sobic006G020300 Sobic003G186800--Sobic003G380200 Sobic003G186800--Sobic003G304300 Sobic009G225600 Sobic009G225600 Sobic003G186800--Sobic009G225600 Sobic003G186800--Sobic006G191500 Sobic001G485100 Sobic001G485100 Sobic003G186800--Sobic001G485100 Sobic010G101000 Sobic010G101000 Sobic003G186800--Sobic010G101000 Sobic003G186800--Sobic004G268400 Sobic002G047400 Sobic002G047400 Sobic003G186800--Sobic002G047400 Sobic003G186800--Sobic004G267700 Sobic005G002400--Sobic008G002400 Sobic005G002400--Sobic003G326000 Sobic005G002400--Sobic001G112900 Sobic001G181100 Sobic001G181100 Sobic005G002400--Sobic001G181100 Sobic002G052100 Sobic002G052100 Sobic005G002400--Sobic002G052100 Sobic004G190100 Sobic004G190100 Sobic005G002400--Sobic004G190100 Sobic010G271800 Sobic010G271800 Sobic005G002400--Sobic010G271800 Sobic005G002400--Sobic006G020300 Sobic005G002400--Sobic003G154400 Sobic007G016600--Sobic004G268400 Sobic007G016600--Sobic004G267700 Sobic007G016600--Sobic001G018000 Sobic007G016600--Sobic003G304300 Sobic007G016600--Sobic002G351200 Sobic010G100900 Sobic010G100900 Sobic007G016600--Sobic010G100900 Sobic010G207100 Sobic010G207100 Sobic007G016600--Sobic010G207100 Sobic007G016600--Sobic003G186800 Sobic007G016600--Sobic003G380200 Sobic003G154400--Sobic002G052100 Sobic003G154400--Sobic005G002400 Sobic003G154400--Sobic006G020300 Sobic003G154400--Sobic007G016600 Sobic003G175800 Sobic003G175800 Sobic003G154400--Sobic003G175800 Sobic003G154400--Sobic002G052000 Sobic003G154400--Sobic008G002400 Sobic003G154400--Sobic001G181100 Sobic003G154400--Sobic004G214800 Sobic004G214800--Sobic003G326000 Sobic004G214800--Sobic002G052100 Sobic004G214800--Sobic001G181100 Sobic004G214800--Sobic010G271800 Sobic004G214800--Sobic005G002400 Sobic004G214800--Sobic001G112900 Sobic004G214800--Sobic006G020300 Sobic004G214800--Sobic003G339200 Sobic004G214800--Sobic003G175800
Octagon: transcription factors


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