Gene annotation
Transcriptome id Sobic.004G282900.1,Sobic.004G282900.2
Synonym Sb04g031920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized membrane protein, putative, expressed
UniProt C5Y0Z6
Pfam PF03105 PF07690
Panther DB PTHR23510 PTHR23510:SF23
NCBI CDD KOG2325; Predicted transporter/transmembrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G63010 : Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
RAP-DB (Rice) LOC_Os02g45520.1 : uncharacterized membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a021506
Brachypodium KQJ84130 , KQK00764 , KQK00763 , KQJ84129 , KQJ84128 , PNT69234
Barley HORVU2Hr1G094690.23 , HORVU2Hr1G094690.22 , HORVU2Hr1G094690.21 , HORVU2Hr1G094690.20 , HORVU2Hr1G094690.24 , HORVU2Hr1G094690.12 , HORVU2Hr1G094690.13 , HORVU2Hr1G094690.10 , HORVU2Hr1G094690.11 , HORVU2Hr1G094690.16 , HORVU2Hr1G094690.17 , HORVU2Hr1G094690.14 , HORVU2Hr1G094690.15 , HORVU2Hr1G094690.18 , HORVU2Hr1G094690.19 , HORVU2Hr1G094690.8 , HORVU2Hr1G094690.9 , HORVU2Hr1G094690.1 , HORVU2Hr1G094690.2 , HORVU2Hr1G094690.3 , HORVU2Hr1G094690.4 , HORVU2Hr1G094690.7
Wheat TraesCS6B02G267800 , TraesCS6D02G238500 , TraesCS2B02G417200 , TraesCS2D02G396700 , TraesCS6A02G257300 , TraesCS6A02G257300 , TraesCS6A02G257300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G052000 early light-induced protein, chloroplast precursor, putative, expressed -
2 Sobic.003G188200 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
3 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
4 Sobic.009G245000 Glucose-1-phosphate adenylyltransferase large subunit(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
5 Sobic.002G052100 early light-induced protein, chloroplast precursor, putative, expressed -
6 Sobic.001G181100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@SCARECROW, putative, expressed -
7 Sobic.001G104900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@peptidase, M50 family, putative, expressed -
8 Sobic.005G002400 expressed protein -
9 Sobic.002G338800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
10 Sobic.004G214800 receptor-like protein kinase 5 precursor, putative, expressed -
11 Sobic.003G326000 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
12 Sobic.006G020300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
13 Sobic.005G176100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-6-phosphate isomerase, putative, expressed K01809: manA, mannose-6-phosphate isomerase
14 Sobic.008G002400 expressed protein -
15 Sobic.001G112900 expressed protein -
16 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.003G175800 - -
18 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
19 Sobic.010G271800 leucine zipper protein-like, putative, expressed -
20 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase


Gene co-expression network
sample Sobic004G282900 Sobic004G282900 Sobic002G052000 Sobic002G052000 Sobic004G282900--Sobic002G052000 Sobic003G188200 Sobic003G188200 Sobic004G282900--Sobic003G188200 Sobic004G323400 Sobic004G323400 Sobic004G282900--Sobic004G323400 Sobic009G245000 Sobic009G245000 Sobic004G282900--Sobic009G245000 Sobic002G052100 Sobic002G052100 Sobic004G282900--Sobic002G052100 Sobic001G181100 Sobic001G181100 Sobic004G282900--Sobic001G181100 Sobic001G104900 Sobic001G104900 Sobic004G282900--Sobic001G104900 Sobic005G002400 Sobic005G002400 Sobic004G282900--Sobic005G002400 Sobic002G338800 Sobic002G338800 Sobic004G282900--Sobic002G338800 Sobic002G052000--Sobic002G052100 Sobic002G052000--Sobic001G181100 Sobic002G052000--Sobic003G188200 Sobic003G175800 Sobic003G175800 Sobic002G052000--Sobic003G175800 Sobic003G154400 Sobic003G154400 Sobic002G052000--Sobic003G154400 Sobic004G214800 Sobic004G214800 Sobic002G052000--Sobic004G214800 Sobic002G052000--Sobic005G002400 Sobic007G163433 Sobic007G163433 Sobic002G052000--Sobic007G163433 Sobic010G271800 Sobic010G271800 Sobic002G052000--Sobic010G271800 Sobic003G188200--Sobic002G052000 Sobic003G188200--Sobic002G052100 Sobic003G440300 Sobic003G440300 Sobic003G188200--Sobic003G440300 Sobic003G326000 Sobic003G326000 Sobic003G188200--Sobic003G326000 Sobic003G188200--Sobic005G002400 Sobic003G188200--Sobic001G181100 Sobic004G190100 Sobic004G190100 Sobic003G188200--Sobic004G190100 Sobic003G188200--Sobic004G323400 Sobic008G002400 Sobic008G002400 Sobic003G188200--Sobic008G002400 Sobic002G417300 Sobic002G417300 Sobic004G323400--Sobic002G417300 Sobic002G295100 Sobic002G295100 Sobic004G323400--Sobic002G295100 Sobic004G323400--Sobic003G188200 Sobic004G323400--Sobic001G104900 Sobic004G323400--Sobic003G440300 Sobic003G425300 Sobic003G425300 Sobic004G323400--Sobic003G425300 Sobic006G041000 Sobic006G041000 Sobic004G323400--Sobic006G041000 Sobic004G323400--Sobic004G282900 Sobic002G291800 Sobic002G291800 Sobic004G323400--Sobic002G291800 Sobic009G245000--Sobic002G338800 Sobic009G245000--Sobic005G002400 Sobic009G245000--Sobic003G326000 Sobic009G245000--Sobic008G002400 Sobic002G213400 Sobic002G213400 Sobic009G245000--Sobic002G213400 Sobic009G245000--Sobic001G104900 Sobic001G018000 Sobic001G018000 Sobic009G245000--Sobic001G018000 Sobic009G245000--Sobic002G052000 Sobic006G020300 Sobic006G020300 Sobic009G245000--Sobic006G020300 Sobic002G052100--Sobic002G052000 Sobic002G052100--Sobic001G181100 Sobic002G052100--Sobic004G214800 Sobic002G052100--Sobic005G002400 Sobic002G052100--Sobic003G175800 Sobic002G052100--Sobic003G154400 Sobic002G052100--Sobic006G020300 Sobic002G052100--Sobic003G326000 Sobic002G052100--Sobic010G271800 Sobic001G181100--Sobic002G052100 Sobic001G181100--Sobic005G002400 Sobic001G181100--Sobic003G326000 Sobic001G181100--Sobic010G271800 Sobic001G181100--Sobic004G214800 Sobic001G181100--Sobic002G052000 Sobic001G181100--Sobic003G175800 Sobic001G181100--Sobic008G002400 Sobic001G181100--Sobic006G020300 Sobic001G104900--Sobic002G338800 Sobic001G104900--Sobic004G323400 Sobic001G104900--Sobic009G245000 Sobic001G112900 Sobic001G112900 Sobic001G104900--Sobic001G112900 Sobic001G313000 Sobic001G313000 Sobic001G104900--Sobic001G313000 Sobic001G104900--Sobic006G041000 Sobic001G104900--Sobic002G052000 Sobic001G104900--Sobic002G295100 Sobic003G186800 Sobic003G186800 Sobic001G104900--Sobic003G186800 Sobic005G002400--Sobic008G002400 Sobic005G002400--Sobic003G326000 Sobic005G002400--Sobic001G112900 Sobic005G002400--Sobic001G181100 Sobic005G002400--Sobic002G052100 Sobic005G002400--Sobic004G190100 Sobic005G002400--Sobic010G271800 Sobic005G002400--Sobic006G020300 Sobic005G002400--Sobic003G154400 Sobic002G338800--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic002G338800--Sobic003G339200 Sobic003G304300 Sobic003G304300 Sobic002G338800--Sobic003G304300 Sobic002G338800--Sobic009G245000 Sobic002G338800--Sobic003G186800 Sobic002G338800--Sobic005G002400 Sobic007G016600 Sobic007G016600 Sobic002G338800--Sobic007G016600 Sobic002G338800--Sobic003G154400 Sobic002G338800--Sobic004G214800
Octagon: transcription factors


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